Literature DB >> 21108039

Construction and functional screening of a metagenomic library using a T7 RNA polymerase-based expression cosmid vector.

François-Xavier Lussier1, Olivier Chambenoit, Amélie Côté, Jean-François Hupé, François Denis, Pierre Juteau, Réjean Beaudet, François Shareck.   

Abstract

The metagenomic approach has greatly accelerated the discovery of new enzymes by giving access to the genetic potential of microorganisms from various environments. Function-based screening depends on adequate expression of the foreign genes in the heterologous host, which can be challenging in large-insert libraries. In this study, the shuttle cosmid vector pFX583 was used for the construction and screening of a metagenomic library. This vector allows T7 RNA polymerase-directed transcription of the cloned DNA and can be used in Escherichia coli and Streptomyces lividans. The DNA used for the library construction was obtained from an enriched biomass. The library was screened for lipolytic and proteolytic activities using E. coli and S. lividans as hosts. Numerous E. coli clones with lipolytic activity were detected. Unfortunately, proteases could not be detected in both hosts. From the lipolytic activity screen, a gene coding for a new lipase was isolated, and partial characterization was conducted.

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Year:  2010        PMID: 21108039     DOI: 10.1007/s10295-010-0915-2

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  38 in total

1.  Bacterial lipolytic enzymes: classification and properties.

Authors:  J L Arpigny; K E Jaeger
Journal:  Biochem J       Date:  1999-10-01       Impact factor: 3.857

2.  Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products.

Authors:  Sophie Courtois; Carmela M Cappellano; Maria Ball; Francois-Xavier Francou; Philippe Normand; Gérard Helynck; Asuncion Martinez; Steven J Kolvek; Joern Hopke; Marcia S Osburne; Paul R August; Renaud Nalin; Michel Guérineau; Pascale Jeannin; Pascal Simonet; Jean-Luc Pernodet
Journal:  Appl Environ Microbiol       Date:  2003-01       Impact factor: 4.792

3.  High-level transcription of large gene regions: a novel T(7) RNA-polymerase-based system for expression of functional hydrogenases in the phototrophic bacterium Rhodobacter capsulatus.

Authors:  T Drepper; S Arvani; F Rosenau; S Wilhelm; K-E Jaeger
Journal:  Biochem Soc Trans       Date:  2005-02       Impact factor: 5.407

Review 4.  Metagenomics: application of genomics to uncultured microorganisms.

Authors:  Jo Handelsman
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

Review 5.  Bacterial biocatalysts: molecular biology, three-dimensional structures, and biotechnological applications of lipases.

Authors:  K E Jaeger; B W Dijkstra; M T Reetz
Journal:  Annu Rev Microbiol       Date:  1999       Impact factor: 15.500

6.  A T7 promoter-specific, inducible protein expression system for Bacillus subtilis.

Authors:  B Conrad; R S Savchenko; R Breves; J Hofemeister
Journal:  Mol Gen Genet       Date:  1996-02-05

7.  Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia.

Authors:  P Entcheva; W Liebl; A Johann; T Hartsch; W R Streit
Journal:  Appl Environ Microbiol       Date:  2001-01       Impact factor: 4.792

8.  One step engineering of T7-expression strains for protein production: increasing the host-range of the T7-expression system.

Authors:  Yun Kang; Mike S Son; Tung T Hoang
Journal:  Protein Expr Purif       Date:  2007-07-12       Impact factor: 1.650

9.  Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts.

Authors:  Asuncion Martinez; Steven J Kolvek; Choi Lai Tiong Yip; Joern Hopke; Kara A Brown; Ian A MacNeil; Marcia S Osburne
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

10.  A T7 RNA polymerase-dependent gene expression system for Bacillus megaterium.

Authors:  Martin Gamer; David Fröde; Rebekka Biedendieck; Simon Stammen; Dieter Jahn
Journal:  Appl Microbiol Biotechnol       Date:  2009-03-24       Impact factor: 4.813

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  4 in total

Review 1.  New extremophilic lipases and esterases from metagenomics.

Authors:  Olalla López-López; Maria E Cerdán; Maria I González Siso
Journal:  Curr Protein Pept Sci       Date:  2014       Impact factor: 3.272

2.  Natural Product Discovery through Improved Functional Metagenomics in Streptomyces.

Authors:  Hala A Iqbal; Lila Low-Beinart; Joseph U Obiajulu; Sean F Brady
Journal:  J Am Chem Soc       Date:  2016-07-22       Impact factor: 15.419

3.  Identification of novel esterase-active enzymes from hot environments by use of the host bacterium Thermus thermophilus.

Authors:  Benedikt Leis; Angel Angelov; Markus Mientus; Haijuan Li; Vu T T Pham; Benjamin Lauinger; Patrick Bongen; Jörg Pietruszka; Luís G Gonçalves; Helena Santos; Wolfgang Liebl
Journal:  Front Microbiol       Date:  2015-04-08       Impact factor: 5.640

4.  Recovery and functional validation of hidden soil enzymes in metagenomic libraries.

Authors:  Dayana Calderon; Luis Peña; Angélica Suarez; Carolina Villamil; Adan Ramirez-Rojas; Juan M Anzola; Juan C García-Betancur; Martha L Cepeda; Daniel Uribe; Patricia Del Portillo; Alvaro Mongui
Journal:  Microbiologyopen       Date:  2019-03-09       Impact factor: 3.139

  4 in total

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