Literature DB >> 21097610

Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.

Hynek Strnad1, Jakub Ridl, Jan Paces, Michal Kolar, Cestmir Vlcek, Vaclav Paces.   

Abstract

Achromobacter xylosoxidans strain A8 was isolated from soil contaminated with polychlorinated biphenyls. It can use 2-chlorobenzoate and 2,5-dichlorobenzoate as sole sources of carbon and energy. This property makes it a good starting microorganism for further development toward a bioremediation tool. The genome of A. xylosoxidans consists of a 7-Mb chromosome and two large plasmids (98 kb and 248 kb). Besides genes for the utilization of xenobiotic organic substrates, it contains genes associated with pathogenesis, toxin production, and resistance. Here, we report the complete genome sequence.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 21097610      PMCID: PMC3021230          DOI: 10.1128/JB.01299-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  17 in total

1.  Characterization of chlorobenzoate degraders isolated from polychlorinated biphenyl-contaminated soil and sediment in the Czech Republic.

Authors:  L Pavlû; J Vosáhlová; H Klierová; M Prouza; K Demnerová; V Brenner
Journal:  J Appl Microbiol       Date:  1999-09       Impact factor: 3.772

2.  Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003.

Authors:  Hynek Strnad; Alla Lapidus; Jan Paces; Pavel Ulbrich; Cestmir Vlcek; Vaclav Paces; Robert Haselkorn
Journal:  J Bacteriol       Date:  2010-04-23       Impact factor: 3.490

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

5.  Nucleotide sequence, organization and characterization of the (halo)aromatic acid catabolic plasmid pA81 from Achromobacter xylosoxidans A8.

Authors:  Vera Jencova; Hynek Strnad; Zdenek Chodora; Pavel Ulbrich; Cestmir Vlcek; W J Hickey; Vaclav Paces
Journal:  Res Microbiol       Date:  2007-12-08       Impact factor: 3.992

6.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

7.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Eric W Sayers
Journal:  Nucleic Acids Res       Date:  2009-11-12       Impact factor: 16.971

8.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971

9.  Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.

Authors:  Tim Carver; Matthew Berriman; Adrian Tivey; Chinmay Patel; Ulrike Böhme; Barclay G Barrell; Julian Parkhill; Marie-Adèle Rajandream
Journal:  Bioinformatics       Date:  2008-10-09       Impact factor: 6.937

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

View more
  18 in total

1.  Genome sequence of the highly efficient arsenite-oxidizing bacterium Achromobacter arsenitoxydans SY8.

Authors:  Xiangyang Li; Yao Hu; Jing Gong; Yanbing Lin; Laurel Johnstone; Christopher Rensing; Gejiao Wang
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

Review 2.  Intercepting signalling mechanism to control environmental biofouling.

Authors:  Smita Pal; Asifa Qureshi; Hemant J Purohit
Journal:  3 Biotech       Date:  2018-08-09       Impact factor: 2.406

3.  Isolation of Paenibacillus sp. and Variovorax sp. strains from decaying woods and characterization of their potential for cellulose deconstruction.

Authors:  Silvina Ghio; Gonzalo Sabarís Di Lorenzo; Verónica Lia; Paola Talia; Angel Cataldi; Daniel Grasso; Eleonora Campos
Journal:  Int J Biochem Mol Biol       Date:  2012-12-24

4.  Identification and Characterization of a Novel pic Gene Cluster Responsible for Picolinic Acid Degradation in Alcaligenes faecalis JQ135.

Authors:  Jiguo Qiu; Lingling Zhao; Siqiong Xu; Qing Chen; Le Chen; Bin Liu; Qing Hong; Zhenmei Lu; Jian He
Journal:  J Bacteriol       Date:  2019-07-24       Impact factor: 3.490

5.  The Novel Monooxygenase Gene dipD in the dip Gene Cluster of Alcaligenes faecalis JQ135 Is Essential for the Initial Catabolism of Dipicolinic Acid.

Authors:  Yang Mu; Siqiong Xu; Guiping Liu; Minggen Cheng; Weixian Dai; Qing Chen; Xin Yan; Qing Hong; Jian He; Jiandong Jiang; Jiguo Qiu
Journal:  Appl Environ Microbiol       Date:  2022-06-29       Impact factor: 5.005

6.  Elevated atmospheric CO2 impacts abundance and diversity of nitrogen cycling functional genes in soil.

Authors:  John J Kelly; Emily Peterson; Jonathan Winkelman; Teagan J Walter; Steven T Rier; Nancy C Tuchman
Journal:  Microb Ecol       Date:  2012-09-08       Impact factor: 4.552

7.  Sulfur oxidation by Achromobacter xylosoxidans strain wsp05 reveals ecological widening over which thiotrophs are distributed.

Authors:  Kapilesh Jadhav; Indrani Jadhav
Journal:  World J Microbiol Biotechnol       Date:  2017-10-03       Impact factor: 3.312

8.  Genome evolution and phylogenomic analysis of Candidatus Kinetoplastibacterium, the betaproteobacterial endosymbionts of Strigomonas and Angomonas.

Authors:  João M P Alves; Myrna G Serrano; Flávia Maia da Silva; Logan J Voegtly; Andrey V Matveyev; Marta M G Teixeira; Erney P Camargo; Gregory A Buck
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

9.  Genome implosion elicits host-confinement in Alcaligenaceae: evidence from the comparative genomics of Tetrathiobacter kashmirensis, a pathogen in the making.

Authors:  Wriddhiman Ghosh; Masrure Alam; Chayan Roy; Prosenjit Pyne; Ashish George; Ranadhir Chakraborty; Saikat Majumder; Atima Agarwal; Sheolee Chakraborty; Subrata Majumdar; Sujoy Kumar Das Gupta
Journal:  PLoS One       Date:  2013-05-31       Impact factor: 3.240

10.  Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil.

Authors:  Ondrej Uhlik; Jiri Wald; Michal Strejcek; Lucie Musilova; Jakub Ridl; Miluse Hroudova; Cestmir Vlcek; Erick Cardenas; Martina Mackova; Tomas Macek
Journal:  PLoS One       Date:  2012-07-13       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.