Literature DB >> 20418398

Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003.

Hynek Strnad1, Alla Lapidus, Jan Paces, Pavel Ulbrich, Cestmir Vlcek, Vaclav Paces, Robert Haselkorn.   

Abstract

Rhodobacter capsulatus SB 1003 belongs to the group of purple nonsulfur bacteria. Its genome consists of a 3.7-Mb chromosome and a 133-kb plasmid. The genome encodes genes for photosynthesis, nitrogen fixation, utilization of xenobiotic organic substrates, and synthesis of polyhydroxyalkanoates. These features made it a favorite research tool for studying these processes. Here we report its complete genome sequence.

Entities:  

Mesh：

Year:  2010        PMID： 20418398      PMCID： PMC2897665          DOI： 10.1128/JB.00366-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

Review 3.  CRISPR/Cas, the immune system of bacteria and archaea.

Authors:  Philippe Horvath; Rodolphe Barrangou
Journal:  Science       Date:  2010-01-08       Impact factor: 47.728

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  CRITICA: coding region identification tool invoking comparative analysis.

Authors:  J H Badger; G J Olsen
Journal:  Mol Biol Evol       Date:  1999-04       Impact factor: 16.240

6.  Chromosomal structure of Rhodobacter capsulatus strain SB1003: cosmid encyclopedia and high-resolution physical and genetic map.

Authors:  M Fonstein; R Haselkorn
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-15       Impact factor: 11.205

7.  Evolutionary implications of phylogenetic analyses of the gene transfer agent (GTA) of Rhodobacter capsulatus.

Authors:  Andrew S Lang; Terumi A Taylor; J Thomas Beatty
Journal:  J Mol Evol       Date:  2002-11       Impact factor: 2.395

8.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971

9.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
View more
  35 in total

1.  Phosphate concentration and the putative sensor kinase protein CckA modulate cell lysis and release of the Rhodobacter capsulatus gene transfer agent.

Authors:  A B Westbye; M M Leung; S M Florizone; T A Taylor; J A Johnson; P C Fogg; J T Beatty
Journal:  J Bacteriol       Date:  2013-08-30       Impact factor: 3.490

2.  Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.

Authors:  Hynek Strnad; Jakub Ridl; Jan Paces; Michal Kolar; Cestmir Vlcek; Vaclav Paces
Journal:  J Bacteriol       Date:  2010-11-19       Impact factor: 3.490

3.  The Protease ClpXP and the PAS Domain Protein DivL Regulate CtrA and Gene Transfer Agent Production in Rhodobacter capsulatus.

Authors:  Alexander B Westbye; Lukas Kater; Christina Wiesmann; Hao Ding; Calvin K Yip; J Thomas Beatty
Journal:  Appl Environ Microbiol       Date:  2018-05-17       Impact factor: 4.792

4.  The CckA-ChpT-CtrA Phosphorelay Controlling Rhodobacter capsulatus Gene Transfer Agent Production Is Bidirectional and Regulated by Cyclic di-GMP.

Authors:  Reynold G Farrera-Calderon; Purvikalyan Pallegar; Alexander B Westbye; Christina Wiesmann; Andrew S Lang; J Thomas Beatty
Journal:  J Bacteriol       Date:  2021-02-08       Impact factor: 3.490

5.  A Rhodobacter capsulatus member of a universal permease family imports molybdate and other oxyanions.

Authors:  Jonathan Gisin; Alexandra Müller; Yvonne Pfänder; Silke Leimkühler; Franz Narberhaus; Bernd Masepohl
Journal:  J Bacteriol       Date:  2010-09-17       Impact factor: 3.490

6.  Proteome Profiling of the Rhodobacter capsulatus Molybdenum Response Reveals a Role of IscN in Nitrogen Fixation by Fe-Nitrogenase.

Authors:  Marie-Christine Hoffmann; Eva Wagner; Sina Langklotz; Yvonne Pfänder; Sina Hött; Julia E Bandow; Bernd Masepohl
Journal:  J Bacteriol       Date:  2015-12-07       Impact factor: 3.490

7.  Unveiling salinity effects on photo-bioelectrocatalysis through combination of bioinformatics and electrochemistry.

Authors:  Erin M Gaffney; Matteo Grattieri; Kevin Beaver; Jennie Pham; Caitlin McCartney; Shelley D Minteer
Journal:  Electrochim Acta       Date:  2020-01-22       Impact factor: 6.901

8.  Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes.

Authors:  Yonghui Zeng; Fuying Feng; Hana Medová; Jason Dean; Michal Koblížek
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-12       Impact factor: 11.205

9.  Induction of Rhodobacter capsulatus Gene Transfer Agent Gene Expression Is a Bistable Stochastic Process Repressed by an Extracellular Calcium-Binding RTX Protein Homologue.

Authors:  Hao Ding; Marc P Grüll; Martin E Mulligan; Andrew S Lang; J Thomas Beatty
Journal:  J Bacteriol       Date:  2019-11-05       Impact factor: 3.490

10.  The SOS Response Master Regulator LexA Regulates the Gene Transfer Agent of Rhodobacter capsulatus and Represses Transcription of the Signal Transduction Protein CckA.

Authors:  Kevin S Kuchinski; Cedric A Brimacombe; Alexander B Westbye; Hao Ding; J Thomas Beatty
Journal:  J Bacteriol       Date:  2016-02-01       Impact factor: 3.490
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.