| Literature DB >> 21092186 |
Isabelle Dumas1, Caroline Diorio.
Abstract
BACKGROUND: Single nucleotide polymorphisms (SNPs) in genes involved in the estrogen pathway appear to be associated with breast cancer risk and possibly with mammographic density (MD), but little is known of these associations among premenopausal women. This study examines the association of 11 polymorphisms in five estrogen-related genes (estrogen receptors alpha and beta (ERα, ERβ), 17β-hydroxysteroid dehydrogenase 1 (HSD17B1), catechol-O-methyltransferase (COMT), cytochrome P450 1B1 (CYP1B1)) with premenopausal MD. Effect modification of four estrogen-related factors (parity, age at menarche, hormonal derivatives use and body mass index (BMI)) on this relation is also assessed.Entities:
Mesh:
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Year: 2010 PMID: 21092186 PMCID: PMC3000407 DOI: 10.1186/1471-2407-10-636
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Single nucleotide polymorphisms evaluated in the present study
| Gene name | Encoded product | N | Alleles (major > minor) | Gene Location | Panel | Call Rate | |
|---|---|---|---|---|---|---|---|
| ERα | Estrogen receptor α | 728 | T > C | rs2077647 | Exon 1 | SNPstream | 98.2% |
| 735 | A > G | rs2234693 | Intron 1 | SNPstream | 99.2% | ||
| 735 | A > G | rs9340799 | Intron 1 | SNPstream | 99.2% | ||
| 736 | C > T | rs2228480 | Exon 8 | SNPstream | 99.3% | ||
| ERβ | Estrogen receptor β | 735 | T > C | rs3829768 | Promoter | SNPstream | 99.2% |
| 737 | G > A | rs1256049 | Exon 6 | SNPstream | 99.5% | ||
| HSD17B1 | 17β-hydroxysteroid dehydrogenase 1 | 737 | G > T | rs676387 | Intron 4 | Sequenom | 99.5% |
| 732 | C > T | rs598126 | COASY : Exon | Sequenom | 98.8% | ||
| 734 | G > A | rs2010750 | TCFL4 : Intron | Sequenom | 99.1% | ||
| COMT | Catechol-O-methyltransferase | 735 | G > A | rs4680 | Exon 4 | Sequenom | 99.2% |
| CYP1B1 | Cytochrome P450 1B1 | 737 | C > G | rs1056836 | Exon 3 | Sequenom | 99.5% |
a Polymorphisms are identified by their dbSNP accession number at http://www.ncbi.nlm.nih.gov/SNP/.
Characteristics of study subjects (N = 741)
| Characteristic | Mean | SD |
|---|---|---|
| Age at mammography (years) | 46.8 | 4.6 |
| Body mass index (kg/m2) | 25.2 | 4.6 |
| Waist-to-hip ratio | 0.8 | 0.1 |
| Height (cm) | 160.5 | 5.8 |
| Age at menarche (years) | 12.7 | 1.6 |
| Age at first pregnancy (years) a (n = 563) | 26.0 | 3.7 |
| Number of live births a (n = 563) | 2.1 | 0.8 |
| Alcohol intake (drinks/wk) (n = 738) | 3.4 | 3.8 |
| Total energy intake (Kcal/day) (n = 736) | 1906.0 | 514.9 |
| Physical activity (MET-h/wk) (n = 740) | 27.1 | 22.2 |
| Percent density (%) | 42.3 | 24.3 |
| Absolute density (cm²) | 47.1 | 28.7 |
| % | ||
| Parity (parous) | 76.0 | |
| Lactation (yes) a (n = 563) | 62.0 | |
| Personal history of breast biopsies (yes) | 14.2 | |
| Past hormonal derivative use (yes) (n = 740) b | 92.4 | |
| First degree relative with breast cancer (yes) | 36.8 | |
| Education (college or university degree) | 62.0 | |
| Smoking status (never) | 45.1 | |
a Among parous women
b Past oral contraceptive (92.2%) and hormone replacement therapy (6.1%) uses
Associations between SNPs in genes involved in the estrogen pathway and mammographic density
| Mean mammographic density | |||||||
|---|---|---|---|---|---|---|---|
| Gene name | Genotype | Crude | Crude | ||||
| ERα | rs2077647 | TT | 189 (25.96) | 42.5 (39.0-46.0) | 42.5 (39.7-45.4) | 47.7 (43.6-51.9) | 47.6 (43.8-51.7) |
| TC | 357 (49.04) | 42.5 (40.0-45.1) | 42.5 (40.5-44.6) | 47.8 (44.8-50.8) | 47.1 (44.3-50.0) | ||
| CC | 182 (25.00) | 42.6 (39.0-46.1) | 43.3 (40.4-46.3) | 45.5 (41.5-49.7) | 44.8 (40.9-48.8) | ||
| 0.98 | 0.69 | 0.48 | 0.31 | ||||
| rs2234693 | AA | 211 (28.71) | 41.6 (38.3-44.8) | 42.3 (39.5-45.0) | 48.0 (44.1-52.0) | 48.3 (44.6-52.2) | |
| AG | 350 (47.62) | 42.6 (40.1-45.2) | 42.1 (40.0-44.2) | 47.6 (44.7-50.7) | 46.7 (43.9-49.7) | ||
| GG | 174 (23.67) | 42.7 (39.1-46.3) | 43.7 (40.7-46.7) | 45.2 (41.1-49.4) | 44.3 (40.4-48.4) | ||
| 0.63 | 0.50 | 0.35 | 0.16 | ||||
| rs9340799 | AA | 301 (40.95) | 42.1 (39.3-44.8) | 42.7 (40.5-45.0) | 49.1 (45.8-52.5) | 49.4 (46.2-52.6) | |
| AG | 327 (44.49) | 42.2 (39.6-44.9) | 41.8 (39.6-43.9) | 45.8 (42.8-49.0) | 44.6 (41.7-47.5) | ||
| GG | 107 (14.56) | 43.9 (39.3-48.5) | 44.9 (41.1-48.7) | 46.6 (41.4-52.2) | 46.2 (41.2-51.6) | ||
| 0.58 | 0.58 | 0.26 | 0.11 | ||||
| rs2228480 | CC | 508 (69.02) | 41.5 (39.4-43.6) | 42.0 (40.3-43.8) | 46.3 (43.9-48.9) | 46.1 (43.8-48.5) | |
| CT | 207 (28.13) | 44.4 (41.1-47.7) | 43.4 (40.7-46.1) | 48.6 (44.7-52.6) | 46.9 (43.2-50.8) | ||
| TT | 21 (2.85) | 43.0 (32.6-53.4) | 47.3 (38.7-55.9) | 53.2 (40.9-67.2) | 56.6 (44.3-70.5) | ||
| 0.20 | 0.20 | 0.19 | 0.25 | ||||
| ERβ | rs3829768 | TT | 733 (99.73) | 42.4 (40.6-44.1) | 42.6 (41.2-44.0) | 47.2 (45.1-49.3) | 46.7 (44.7-48.7) |
| TC | 2(0.27) | 30.3 (-3.4-64.0) | 16.5 (-11.2-44.2) | 45.6 (15.9-94.2) | 34.0 (10.6-74.7) | ||
| 0.48 | 0.07 | 0.94 | 0.48 | ||||
| rs1256049 | GG | 688 (93.35) | 42.6 (40.8-44.4) | 42.8 (41.3-44.2) | 47.4 (45.3-49.6) | 46.9 (44.8-48.9) | |
| GA | 48 (6.51) | 38.9 (32.0-45.8) | 40.0 (34.3-45.6) | 44.2 (36.7-52.4) | 44.5 (37.3-52.5) | ||
| AA | 1 (0.14) | 43.0 (-4.7-90.7) | 54.1 (12.1-133.8) | ||||
| 0.33 | 0.35 | 0.50 | 0.57 | ||||
| HSD17B1 | rs676387 | GG | 390 (52.92) | 42.2 (39.8-44.6) | 41.7 (39.8-43.7) | 46.2 (43.4-49.0) | 45.1 (42.5-47.8) |
| GT | 288 (39.08) | 42.8 (40.0-45.6) | 43.4 (41.1-45.7) | 48.4 (45.1-51.8) | 48.4 (45.2-51.7) | ||
| TT | 59 (8.01) | 40.1 (33.9-46.3) | 42.6 (37.4-47.9) | 46.4 (39.5-54.0) | 47.3 (40.4-54.8) | ||
| 0.83 | 0.39 | 0.53 | 0.20 | ||||
| rs598126 | CC | 195 (26.64) | 41.2 (37.8-44.7) | 42.6 (39.8-45.5) | 48.2 (44.2-52.4) | 48.4 (44.5-52.5) | |
| CT | 354 (48.36) | 43.7 (41.1-46.2) | 43.1 (41.0-45.2) | 47.6 (44.6-50.6) | 46.6 (43.8-49.5) | ||
| TT | 183 (25.00) | 40.5 (37.0-44.1) | 41.0 (38.1-43.9) | 44.5 (40.6-48.6) | 44.3 (40.5-48.3) | ||
| 0.81 | 0.44 | 0.21 | 0.15 | ||||
| rs2010750 | GG | 237 (32.29) | 41.9 (38.8-45.0) | 42.8 (40.3-45.4) | 47.7 (44.1-51.5) | 47.5 (44.0-51.1) | |
| GA | 351 (47.82) | 43.6 (41.0-46.1) | 43.1 (41.0-45.1) | 48.0 (45.0-51.1) | 47.3 (44.5-50.2) | ||
| AA | 146 (19.89) | 40.2 (36.3-44.2) | 41.0 (37.7-44.2) | 44.2 (39.9-48.8) | 44.0 (39.7-48.4) | ||
| 0.67 | 0.46 | 0.30 | 0.26 | ||||
| COMT | rs4680 | GG | 190 (25.85) | 43.1 (39.6-46.6) | 42.4 (39.5-45.3) | 48.0 (44.0-52.2) | 47.7 (43.8-51.8) |
| GA | 375 (51.02) | 43.3 (40.8-45.8) | 43.8 (41.7-45.8) | 47.1 (44.3-50.1) | 46.5 (43.7-49.3) | ||
| AA | 170 (23.13) | 39.0 (35.3-42.6) | 39.6 (36.6-42.6) | 45.7 (41.6-50.1) | 45.4 (41.5-49.6) | ||
| 0.12 | 0.21 | 0.45 | 0.43 | ||||
| CYP1B1 | rs1056836 | CC | 219 (29.72) | 43.7 (40.4-46.9) | 43.7 (41.0-46.3) | 49.6 (45.8-53.6) | 48.8 (45.2-52.6) |
| CG | 372 (50.47) | 42.3 (39.8-44.8) | 42.8 (40.8-44.8) | 46.7 (43.8-49.6) | 46.4 (43.7-49.2) | ||
| GG | 146 (19.81) | 40.2 (36.2-44.1) | 39.8 (36.6-43.1) | 44.2 (39.9-48.9) | 43.6 (39.4-48.0) | ||
| 0.18 | 0.09 | 0.07 | 0.08 | ||||
a CI: confidence interval. b Means of absolute density are presented as back-transformed values.
c SNPs: single nucleotide polymorphisms. They are identified by their dbSNP accession number at http://www.ncbi.nlm.nih.gov/SNP/.
d N (%) values are slightly lower in adjusted models because of ten missing values in adjustment variables. e Adjusted for age at mammography, body mass index, waist-to-hip ratio, height, age at menarche, age at first birth, number of full-term pregnancies, breastfeeding, number of breast biopsies, family history of breast cancer, past contraceptive and hormone replacement therapy uses, smoking status, energy and alcohol intakes, physical activity and education. f P value is the P trend, testing genotype dosage, number of copies of the rare allele entered as 0, 1, 2 and mammographic density entered as continuous variable.
Modifying effect of estrogen-related factors on the association between SNPs and mammographic density
| SNP reference | Adjusted mean mammographic density (95% CI) a | |||||||
|---|---|---|---|---|---|---|---|---|
| Gene name | ID b | Genotype | N (%) | Percent density (%) | Absolute density (cm2) c | |||
| COMT | rs4680 | GG | 44 (6.1) | 143 (19.7) | 43.1 (37.1-49.1) | 42.0 (38.7-45.3) | 43.3 (35.7-51.7) | 48.8 (44.3-53.6) |
| GA | 96 (13.2) | 275 (38.0) | 45.3 (41.3-49.3) | 43.3 (41.0-45.7) | 46.4 (41.1-52.1) | 46.7 (43.5-50.1) | ||
| AA | 34 (4.7) | 133 (18.3) | 43.4 (36.7-50.0) | 38.6 (35.2-42.0) | 52.6 (43.3-62.9) | 43.6 (39.3-48.2) | ||
| 0.93 | 0.17 | 0.15 | 0.12 | |||||
| 0.47 | 0.05 | |||||||
| CYP1B1 | rs1056836 | CC | 53 (7.3) | 163 (22.4) | 46.6 (41.1-52.1) | 42.8 (39.7-45.8) | 54.2 (46.4-62.7) | 47.2 (43.1-51.5) |
| GC | 86 (11.8) | 282 (38.8) | 46.3 (42.0-50.5) | 41.8 (39.5-44.1) | 47.0 (41.3-53.0) | 46.4 (43.3-49.6) | ||
| GG | 35 (4.8) | 108 (14.8) | 36.9 (30.3-43.5) | 40.6 (36.8-44.3) | 37.0 (29.5-45.4) | 45.5 (40.6-50.7) | ||
| 0.04 | 0.38 | 0.004 | 0.62 | |||||
| 0.19 | 0.02 | |||||||
| HSD17B1 | rs598126 | CC | 14 (1.9) | 177 (24.5) | 38.3 (27.7-49.0) | 43.0 (40.1-45.9) | 38.1 (26.3-52.4) | 49.3 (45.2-53.5) |
| CT | 24 (3.3) | 326 (45.2) | 44.2 (36.2-52.2) | 43.0 (40.9-45.2) | 45.4 (35.2-56.9) | 46.6 (43.7-49.7) | ||
| TT | 16 (2.2) | 165 (22.9) | 52.0 (42.1-61.8) | 39.9 (36.9-42.9) | 56.6 (42.6-72.7) | 43.1 (39.2-47.2) | ||
| 0.06 | 0.16 | 0.06 | 0.04 | |||||
| 0.03 | 0.02 | |||||||
| HSD17B1 | rs2010750 | GG | 15 (2.1) | 218 (30.1) | 38.2 (27.9-48.5) | 43.1 (40.5-45.8) | 37.9 (26.5-51.7) | 48.2 (44.6-52.0) |
| AG | 25 (3.5) | 322 (44.5) | 44.7 (36.8-52.5) | 42.9 (40.8-45.1) | 45.8 (35.8-57.2) | 47.4 (44.4-50.4) | ||
| AA | 15 (2.1) | 129 (17.8) | 52.9 (42.8-63.0) | 39.6 (36.2-43.0) | 58.7 (44.1-75.7) | 42.4 (38.0-47.0) | ||
| 0.04 | 0.16 | 0.04 | 0.08 | |||||
| 0.02 | 0.01 | |||||||
| COMT | rs4680 | GG | 15 (2.1) | 172 (23.7) | 47.5 (37.3-57.6) | 41.8 (38.9-44.8) | 55.0 (40.9-71.4) | 47.0 (43.0-51.2) |
| GA | 29 (4.0) | 342 (47.1) | 49.1 (41.7-56.6) | 43.3 (41.2-45.4) | 50.2 (40.2-61.5) | 46.1 (43.3-49.0) | ||
| AA | 11 (1.5) | 156 (21.5) | 31.8 (20.1-43.6) | 40.2 (37.1-43.3) | 30.6 (19.4-44.9) | 46.6 (42.5-51.0) | ||
| 0.07 | 0.50 | 0.02 | 0.93 | |||||
| 0.12 | 0.03 | |||||||
| COMT | rs4680 | GG | 76 (10.8) | 108 (15.3) | 41.2 (36.7-45.6) | 43.7 (39.9-47.5) | 42.7 (37.0-48.8) | 51.6 (46.2-57.2) |
| GA | 165 (23.3) | 196 (27.7) | 43.0 (40.0-46.1) | 43.9 (41.1-46.7) | 48.7 (44.5-53.1) | 43.7 (40.1-47.5) | ||
| AA | 73 (10.3) | 89 (12.6) | 40.8 (36.2-45.4) | 38.2 (34.1-42.4) | 47.9 (41.7-54.6) | 43.4 (38.1-49.0) | ||
| 0.93 | 0.06 | 0.22 | 0.03 | |||||
| 0.25 | 0.02 | |||||||
| HSD17B1 | rs598126 | CC | 91 (12.6) | 100 (13.9) | 49.8 (45.5-54.1) | 34.5 (30.4-38.6) | 49.1 (43.3-55.2) | 47.1 (41.7-52.9) |
| CT | 188 (26.0) | 162 (22.4) | 51.3 (48.3-54.3) | 34.7 (31.5-38.0) | 50.0 (45.8-54.3) | 43.7 (39.5-48.0) | ||
| TT | 92 (12.7) | 89 (12.3) | 52.3 (48.0-56.6) | 29.1 (24.7-33.4) | 51.9 (45.9-58.2) | 37.2 (32.2-42.6) | ||
| 0.42 | 0.08 | 0.53 | 0.01 | |||||
| 0.07 | 0.02 | |||||||
a Analyses are adjusted for age at mammography, body mass index, waist-to-hip ratio, height, age at menarche, number of breast biopsies, family history of breast cancer, past contraceptive and hormone replacement therapy uses, smoking status, energy and alcohol intakes, physical activity and education when applicable. Except for modifying effect of parity, models were also adjusted for age at first birth, number of full-term pregnancies and breastfeeding. CI: confidence interval.
b SNPs: single nucleotide polymorphisms. They are identified by their dbSNP accession number at http://www.ncbi.nlm.nih.gov/SNP/.
c Means of absolute density are presented as back-transformed values.
d P value is the P trend, testing genotype dosage, number of copies of the rare allele entered as 0, 1, 2 and mammographic density entered as a continuous variable.
e P value for interaction between the variable (parity, hormonal derivative used, age at menarche or body mass index) and the genotype dosage from linear regression.