Literature DB >> 21088689

QSRR Models for Kováts' Retention Indices of a Variety of Volatile Organic Compounds on Polar and Apolar GC Stationary Phases Using Molecular Connectivity Indexes.

Raouf Ghavami1, Shadab Faham.   

Abstract

Quantitative structure-retention relationship (QSRR) approaches, based on molecular connectivity indices are useful to predict the gas chromatography of Kováts relative retention indices (GC-RRIs) of 132 volatile organic compounds (VOCs) on different 12 (4 apolar and 8 polar) stationary phases (C(67), C(103), C(78), C(∞), POH, TTF, MTF, PCL, PBR, TMO, PSH and PCN) at 130 °C. Full geometry optimization based on Austin model 1 semi-empirical molecular orbital method was carried out. The sets of 30 molecular descriptors were derived directly from the topological structures of the compounds from DRAGON program. By means of the final variable selection method, which is elimination selection stepwise regression algorithms, three optimal descriptors were selected to develop a QSRR model to predict the RRI of organic compounds on each stationary phase with a correlation coefficient between 0.9378 and 0.9673 and a leave-one-out cross-validation correlation coefficient between 0.9325 and 0.9653. The root mean squares errors over different 12 phases were within the range of 0.0333-0.0458. Furthermore, the accuracy of all developed models was confirmed using procedures of Y-randomization, external validation through an odd-even number and division of the entire dataset into training and test sets. A successful interpretation of the complex relationship between GC RRIs of VOCs and the chemical structures was achieved by QSRR. The three connectivity indexes in the models are also rationally interpreted, which indicated that all organic compounds' RRI was precisely represented by molecular connectivity indexes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1365/s10337-010-1741-4) contains supplementary material, which is available to authorized users.

Entities:  

Year:  2010        PMID: 21088689      PMCID: PMC2965364          DOI: 10.1365/s10337-010-1741-4

Source DB:  PubMed          Journal:  Chromatographia        ISSN: 0009-5893            Impact factor:   2.044


  24 in total

1.  On interpretation of well-known topological indices.

Authors:  M Randić; J Zupan
Journal:  J Chem Inf Comput Sci       Date:  2001 May-Jun

2.  Quantum-Chemical Descriptors in QSAR/QSPR Studies.

Authors:  Mati Karelson; Victor S. Lobanov; Alan R. Katritzky
Journal:  Chem Rev       Date:  1996-05-09       Impact factor: 60.622

3.  Modeling chromatographic parameters by a novel graph theoretical sub-structural approach.

Authors:  E Estrada; Y Gutierrez
Journal:  J Chromatogr A       Date:  1999-10-15       Impact factor: 4.759

4.  QSPR correlation and predictions of GC retention indexes for methyl-branched hydrocarbons produced by insects.

Authors:  A R Katritzky; K Chen; U Maran; D A Carlson
Journal:  Anal Chem       Date:  2000-01-01       Impact factor: 6.986

5.  The problem of overfitting.

Authors:  Douglas M Hawkins
Journal:  J Chem Inf Comput Sci       Date:  2004 Jan-Feb

6.  Prediction of gas chromatographic retention indices of a diverse set of toxicologically relevant compounds.

Authors:  Z Garkani-Nejad; M Karlovits; W Demuth; T Stimpfl; W Vycudilik; M Jalali-Heravi; K Varmuza
Journal:  J Chromatogr A       Date:  2004-03-05       Impact factor: 4.759

Review 7.  QSRR: quantitative structure-(chromatographic) retention relationships.

Authors:  Roman Kaliszan
Journal:  Chem Rev       Date:  2007-06-27       Impact factor: 60.622

8.  QSPR study of GC retention indices for saturated esters on seven stationary phases based on novel topological indices.

Authors:  Fengping Liu; Yizeng Liang; Chenzhong Cao; Neng Zhou
Journal:  Talanta       Date:  2007-01-20       Impact factor: 6.057

9.  Isothermal retention indices on poly(3-cyanopropylmethylsiloxane) stationary phases.

Authors:  Ana María Tello; Rosa Lebrón-Aguilar; Jesús Eduardo Quintanilla-López; José María Santiuste
Journal:  J Chromatogr A       Date:  2008-10-14       Impact factor: 4.759

10.  Identification of a series of novel derivatives as potent HCV inhibitors by a ligand-based virtual screening optimized procedure.

Authors:  Georgia Melagraki; Antreas Afantitis; Haralambos Sarimveis; Panayiotis A Koutentis; John Markopoulos; Olga Igglessi-Markopoulou
Journal:  Bioorg Med Chem       Date:  2007-08-25       Impact factor: 3.641

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  1 in total

1.  Applying in-silico retention index and mass spectra matching for identification of unknown metabolites in accurate mass GC-TOF mass spectrometry.

Authors:  Sangeeta Kumari; Doug Stevens; Tobias Kind; Carsten Denkert; Oliver Fiehn
Journal:  Anal Chem       Date:  2011-06-28       Impact factor: 6.986

  1 in total

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