Literature DB >> 11410029

On interpretation of well-known topological indices.

M Randić1, J Zupan.   

Abstract

Many topological indices lack an interpretation in terms of simple physicochemical quantities. We have reexamined the structural interpretation of well-known topological indices: the connectivity index (1)chi, the Wiener index W, and the Hosoya topological index Z. We relate the success of various indices in structure-property studies to the degree to which they differentiate contributions from more exposed terminal bonds and more buried interior bonds. When considering bond additive properties of alkanes we find better regressions when greater weights are assigned to terminal CC bonds and lesser weights to internal CC. We suggest here that topological indices be discussed in terms of their partitioning into bond contributions, which for different indices and different bonds will assume different values. With this insight we modified the Wiener index W into a new index W, in which bond contributions are determined using the reciprocal of the product of the number of atoms on each side of a bond. Similarly we modified the Hosoya index Z into Z in which the frequency of occurrence of individual CC bonds in the patterns of disjoint bonds are considered. Novel indices are compared with other indices and they show to yield better regressions for boiling points of octane isomers. This suggests a useful classification of topological indices based on the relative magnitudes of the contributions of terminal and interior bonds. To extend such considerations to other indices one needs to consider partitioning of global molecular indices into bond additive terms. A general scheme for partitioning of molecular descriptors into bond contributions is outlined for indices derived from a selection of matrices associated with molecular graphs.

Entities:  

Year:  2001        PMID: 11410029     DOI: 10.1021/ci000095o

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  12 in total

Review 1.  Variable connectivity index as a tool for modeling structure-property relationships.

Authors:  Milan Randić; Matevz Pompe; Denise Mills; Subhash C Basak
Journal:  Molecules       Date:  2004-12-31       Impact factor: 4.411

Review 2.  Impersonality of the connectivity index and recomposition of topological indices according to different properties.

Authors:  Xiao-Ling Peng; Kai-Tai Fang; Qian-Nan Hu; Yi-Zeng Liang
Journal:  Molecules       Date:  2004-12-31       Impact factor: 4.411

3.  On the interpretation and interpretability of quantitative structure-activity relationship models.

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Journal:  J Comput Aided Mol Des       Date:  2008-09-11       Impact factor: 3.686

4.  QSRR Models for Kováts' Retention Indices of a Variety of Volatile Organic Compounds on Polar and Apolar GC Stationary Phases Using Molecular Connectivity Indexes.

Authors:  Raouf Ghavami; Shadab Faham
Journal:  Chromatographia       Date:  2010-09-09       Impact factor: 2.044

5.  Click Chemistry-Facilitated Structural Diversification of Nitrothiazoles, Nitrofurans, and Nitropyrroles Enhances Antimicrobial Activity against Giardia lamblia.

Authors:  Wan Jung Kim; Keith A Korthals; Suhua Li; Christine Le; Jarosław Kalisiak; K Barry Sharpless; Valery V Fokin; Yukiko Miyamoto; Lars Eckmann
Journal:  Antimicrob Agents Chemother       Date:  2017-05-24       Impact factor: 5.191

6.  Estimating the octanol/water partition coefficient for aliphatic organic compounds using semi-empirical electrotopological index.

Authors:  Erica Silva Souza; Laize Zaramello; Carlos Alberto Kuhnen; Berenice da Silva Junkes; Rosendo Augusto Yunes; Vilma Edite Fonseca Heinzen
Journal:  Int J Mol Sci       Date:  2011-10-24       Impact factor: 5.923

7.  A survey of quantitative descriptions of molecular structure.

Authors:  Rajarshi Guha; Egon Willighagen
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

8.  Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs.

Authors:  Samuela Pasquali; Hin Hark Gan; Tamar Schlick
Journal:  Nucleic Acids Res       Date:  2005-03-03       Impact factor: 16.971

9.  Exploring the adenylation domain repertoire of nonribosomal peptide synthetases using an ensemble of sequence-search methods.

Authors:  Guillermin Agüero-Chapin; Reinaldo Molina-Ruiz; Emanuel Maldonado; Gustavo de la Riva; Aminael Sánchez-Rodríguez; Vitor Vasconcelos; Agostinho Antunes
Journal:  PLoS One       Date:  2013-07-16       Impact factor: 3.240

10.  In Silico Drug Repurposing for Anti-Inflammatory Therapy: Virtual Search for Dual Inhibitors of Caspase-1 and TNF-Alpha.

Authors:  Alejandro Speck-Planche; Valeria V Kleandrova; Marcus T Scotti
Journal:  Biomolecules       Date:  2021-12-04
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