Literature DB >> 21087766

A review of diffusion tensor magnetic resonance imaging computational methods and software tools.

Khader M Hasan1, Indika S Walimuni, Humaira Abid, Klaus R Hahn.   

Abstract

In this work we provide an up-to-date short review of computational magnetic resonance imaging (MRI) and software tools that are widely used to process and analyze diffusion-weighted MRI data. A review of different methods used to acquire, model and analyze diffusion-weighted imaging data (DWI) is first provided with focus on diffusion tensor imaging (DTI). The major preprocessing, processing and post-processing procedures applied to DTI data are discussed. A list of freely available software packages to analyze diffusion MRI data is also provided. 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID： 21087766      PMCID： PMC3135778          DOI： 10.1016/j.compbiomed.2010.10.008

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN： 0010-4825            Impact factor:   4.589


  140 in total

1.  Condition number as a measure of noise performance of diffusion tensor data acquisition schemes with MRI.

Authors:  S Skare; M Hedehus; M E Moseley; T Q Li
Journal:  J Magn Reson       Date:  2000-12       Impact factor: 2.229

2.  Anisotropic noise propagation in diffusion tensor MRI sampling schemes.

Authors:  P G Batchelor; D Atkinson; D L G Hill; F Calamante; A Connelly
Journal:  Magn Reson Med       Date:  2003-06       Impact factor: 4.668

3.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

4.  Atlas-based analysis of neurodevelopment from infancy to adulthood using diffusion tensor imaging and applications for automated abnormality detection.

Authors:  Andreia V Faria; Jiangyang Zhang; Kenichi Oishi; Xin Li; Hangyi Jiang; Kazi Akhter; Laurent Hermoye; Seung-Koo Lee; Alexander Hoon; Elaine Stashinko; Michael I Miller; Peter C M van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2010-04-24       Impact factor: 6.556

5.  Feasibility of prefronto-caudate pathway tractography using high resolution diffusion tensor tractography data at 3T.

Authors:  Arash Kamali; Larry A Kramer; Khader M Hasan
Journal:  J Neurosci Methods       Date:  2010-06-30       Impact factor: 2.390

6.  Diffusion tensor MR imaging of the human brain.

Authors:  C Pierpaoli; P Jezzard; P J Basser; A Barnett; G Di Chiro
Journal:  Radiology       Date:  1996-12       Impact factor: 11.105

7.  Limitations of apparent diffusion coefficient-based models in characterizing non-gaussian diffusion.

Authors:  Chunlei Liu; Roland Bammer; Michael E Moseley
Journal:  Magn Reson Med       Date:  2005-08       Impact factor: 4.668

8.  Voxel based versus region of interest analysis in diffusion tensor imaging of neurodevelopment.

Authors:  Lindsay Snook; Chris Plewes; Christian Beaulieu
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

Review 9.  New histological and physiological stains derived from diffusion-tensor MR images.

Authors:  P J Basser
Journal:  Ann N Y Acad Sci       Date:  1997-05-30       Impact factor: 5.691

10.  Optimised diffusion-weighting for measurement of apparent diffusion coefficient (ADC) in human brain.

Authors:  D Xing; N G Papadakis; C L Huang; V M Lee; T A Carpenter; L D Hall
Journal:  Magn Reson Imaging       Date:  1997       Impact factor: 2.546
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  25 in total

1.  Corticospinal tractography with morphological, functional and diffusion tensor MRI: a comparative study of four deterministic algorithms used in clinical routine.

Authors:  Romuald Seizeur; Nicolas Wiest-Daessle; Sylvain Prima; Camille Maumet; Jean-Christophe Ferre; Xavier Morandi
Journal:  Surg Radiol Anat       Date:  2012-03-18       Impact factor: 1.246

2.  Atlas-based investigation of human brain tissue microstructural spatial heterogeneity and interplay between transverse relaxation time and radial diffusivity.

Authors:  Indika S Walimuni; Khader M Hasan
Journal:  Neuroimage       Date:  2011-05-30       Impact factor: 6.556

3.  Regional differences in white matter integrity in stimulant use disorders: A meta-analysis of diffusion tensor imaging studies.

Authors:  Charlotte L Beard; Joy M Schmitz; Heather E Soder; Robert Suchting; Jin H Yoon; Khader M Hasan; Ponnada A Narayana; F Gerard Moeller; Scott D Lane
Journal:  Drug Alcohol Depend       Date:  2019-05-29       Impact factor: 4.492

4.  Compromised small-world efficiency of structural brain networks in schizophrenic patients and their unaffected parents.

Authors:  Hao Yan; Lin Tian; Qifeng Wang; Qiang Zhao; Weihua Yue; Jun Yan; Bing Liu; Dai Zhang
Journal:  Neurosci Bull       Date:  2015-03-27       Impact factor: 5.203

5.  The Gini coefficient: a methodological pilot study to assess fetal brain development employing postmortem diffusion MRI.

Authors:  Adrian Viehweger; Till Riffert; Bibek Dhital; Thomas R Knösche; Alfred Anwander; Holger Stepan; Ina Sorge; Wolfgang Hirsch
Journal:  Pediatr Radiol       Date:  2014-05-10

6.  White matter changes in corticospinal tract associated with improvement in arm and hand functions in incomplete cervical spinal cord injury: pilot case series.

Authors:  Nuray Yozbatiran; Zafer Keser; Khader Hasan; Argyrios Stampas; Radha Korupolu; Sam Kim; Marcia K O'Malley; Felipe Fregni; Gerard E Francisco
Journal:  Spinal Cord Ser Cases       Date:  2017-06-15

7.  Quantification of DTI in the Pediatric Spinal Cord: Application to Clinical Evaluation in a Healthy Patient Population.

Authors:  B B Reynolds; S By; Q R Weinberg; A A Witt; A T Newton; H R Feiler; B Ramkorun; D B Clayton; P Couture; J E Martus; M Adams; J C Wellons; S A Smith; A Bhatia
Journal:  AJNR Am J Neuroradiol       Date:  2019-06-13       Impact factor: 3.825

8.  DTI-based segmentation and quantification of human brain lateral ventricular CSF volumetry and mean diffusivity: validation, age, gender effects and biophysical implications.

Authors:  Khader M Hasan; F Gerard Moeller; Ponnada A Narayana
Journal:  Magn Reson Imaging       Date:  2014-01-29       Impact factor: 2.546

9.  Lateral ventricular cerebrospinal fluid diffusivity as a potential neuroimaging marker of brain temperature in multiple sclerosis: a hypothesis and implications.

Authors:  Khader M Hasan; John A Lincoln; Flavia M Nelson; Jerry S Wolinsky; Ponnada A Narayana
Journal:  Magn Reson Imaging       Date:  2014-12-05       Impact factor: 2.546

10.  Spatial Mapping of Translational Diffusion Coefficients Using Diffusion Tensor Imaging: A Mathematical Description.

Authors:  Anil N Shetty; Sharon Chiang; Mirjana Maletic-Savatic; Gregor Kasprian; Marina Vannucci; Wesley Lee
Journal:  Concepts Magn Reson Part A Bridg Educ Res       Date:  2014-04-15       Impact factor: 0.481
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