Literature DB >> 21082427

Reactome knowledgebase of human biological pathways and processes.

Peter D'Eustachio1.   

Abstract

The Reactome Knowledgebase is an online, manually curated resource that provides an integrated view of the molecular details of human biological processes that range from metabolism to DNA replication and repair to signaling cascades. Its data model allows these diverse processes to be represented in a consistent way to facilitate usage as online text and as a resource for data mining, modeling, and analysis of large-scale expression data sets over the full range of human biological processes.

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Year:  2011        PMID: 21082427     DOI: 10.1007/978-1-60761-977-2_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  43 in total

1.  Genome-scale analysis of interaction dynamics reveals organization of biological networks.

Authors:  Jishnu Das; Jaaved Mohammed; Haiyuan Yu
Journal:  Bioinformatics       Date:  2012-05-09       Impact factor: 6.937

Review 2.  Bioinformatics for spermatogenesis: annotation of male reproduction based on proteomics.

Authors:  Tao Zhou; Zuo-Min Zhou; Xue-Jiang Guo
Journal:  Asian J Androl       Date:  2013-07-15       Impact factor: 3.285

3.  SynLethDB: synthetic lethality database toward discovery of selective and sensitive anticancer drug targets.

Authors:  Jing Guo; Hui Liu; Jie Zheng
Journal:  Nucleic Acids Res       Date:  2015-10-29       Impact factor: 16.971

Review 4.  An overview of computational life science databases & exchange formats of relevance to chemical biology research.

Authors:  Aaron Smalter Hall; Yunfeng Shan; Gerald Lushington; Mahesh Visvanathan
Journal:  Comb Chem High Throughput Screen       Date:  2013-03       Impact factor: 1.339

5.  Sex-specific gene and pathway modeling of inherited glioma risk.

Authors:  Quinn T Ostrom; Warren Coleman; William Huang; Joshua B Rubin; Justin D Lathia; Michael E Berens; Gil Speyer; Peter Liao; Margaret R Wrensch; Jeanette E Eckel-Passow; Georgina Armstrong; Terri Rice; John K Wiencke; Lucie S McCoy; Helen M Hansen; Christopher I Amos; Jonine L Bernstein; Elizabeth B Claus; Richard S Houlston; Dora Il'yasova; Robert B Jenkins; Christoffer Johansen; Daniel H Lachance; Rose K Lai; Ryan T Merrell; Sara H Olson; Siegal Sadetzki; Joellen M Schildkraut; Sanjay Shete; Ulrika Andersson; Preetha Rajaraman; Stephen J Chanock; Martha S Linet; Zhaoming Wang; Meredith Yeager; Beatrice Melin; Melissa L Bondy; Jill S Barnholtz-Sloan
Journal:  Neuro Oncol       Date:  2019-01-01       Impact factor: 12.300

Review 6.  Protein function in precision medicine: deep understanding with machine learning.

Authors:  Burkhard Rost; Predrag Radivojac; Yana Bromberg
Journal:  FEBS Lett       Date:  2016-08-06       Impact factor: 4.124

7.  Four new loci associations discovered by pathway-based and network analyses of the genome-wide variability profile of Hirschsprung's disease.

Authors:  Raquel Ma Fernández; Marta Bleda; Rocío Núñez-Torres; Ignacio Medina; Berta Luzón-Toro; Luz García-Alonso; Ana Torroglosa; Martina Marbà; Ma Valle Enguix-Riego; David Montaner; Guillermo Antiñolo; Joaquín Dopazo; Salud Borrego
Journal:  Orphanet J Rare Dis       Date:  2012-12-28       Impact factor: 4.123

8.  Genenames.org: the HGNC resources in 2013.

Authors:  Kristian A Gray; Louise C Daugherty; Susan M Gordon; Ruth L Seal; Mathew W Wright; Elspeth A Bruford
Journal:  Nucleic Acids Res       Date:  2012-11-17       Impact factor: 16.971

9.  Chapter 15: disease gene prioritization.

Authors:  Yana Bromberg
Journal:  PLoS Comput Biol       Date:  2013-04-25       Impact factor: 4.475

10.  Genome-wide assessment of the association of rare and common copy number variations to testicular germ cell cancer.

Authors:  Daniel Edsgärd; Marlene D Dalgaard; Nils Weinhold; Agata Wesolowska-Andersen; Ewa Rajpert-De Meyts; Anne Marie Ottesen; Anders Juul; Niels E Skakkebæk; Thomas Skøt Jensen; Ramneek Gupta; Henrik Leffers; Søren Brunak
Journal:  Front Endocrinol (Lausanne)       Date:  2013-01-29       Impact factor: 5.555

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