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Literature DB >> 21079595

Grand challenge commentary: Chassis cells for industrial biochemical production.

Claudia E Vickers¹, Lars M Blank, Jens O Krömer.

Abstract

Hyper-performing whole-cell catalysts are required for the renewable and sustainable production of petrochemical replacements. Chassis cells—self-replicating minimal machines that can be tailored for the production of specific chemicals—will provide the starting point for designing these hyper-performing 'turbo cells'.

Mesh：

Substances：
Hydrocarbons
Carbon

Year: 2010 PMID： 21079595 DOI： 10.1038/nchembio.484

Source DB: PubMed Journal: Nat Chem Biol ISSN： 1552-4450 Impact factor: 15.040

15 in total

1. Chemical and biological single cell analysis.

Authors: Andreas Schmid; Hendrik Kortmann; Petra S Dittrich; Lars M Blank
Journal: Curr Opin Biotechnol Date: 2010-02-16 Impact factor: 9.740

2. Refinement and standardization of synthetic biological parts and devices.

Authors: Barry Canton; Anna Labno; Drew Endy
Journal: Nat Biotechnol Date: 2008-07 Impact factor: 54.908

Review 3. The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli.

Authors: Adam M Feist; Bernhard Ø Palsson
Journal: Nat Biotechnol Date: 2008-06 Impact factor: 54.908

4. Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase.

Authors: Lars M Blank; Georgios Ionidis; Birgitta E Ebert; Bruno Bühler; Andreas Schmid
Journal: FEBS J Date: 2008-09-18 Impact factor: 5.542

5. Encoding multiple unnatural amino acids via evolution of a quadruplet-decoding ribosome.

Authors: Heinz Neumann; Kaihang Wang; Lloyd Davis; Maria Garcia-Alai; Jason W Chin
Journal: Nature Date: 2010-02-14 Impact factor: 49.962

6. Creation of a bacterial cell controlled by a chemically synthesized genome.

Authors: Daniel G Gibson; John I Glass; Carole Lartigue; Vladimir N Noskov; Ray-Yuan Chuang; Mikkel A Algire; Gwynedd A Benders; Michael G Montague; Li Ma; Monzia M Moodie; Chuck Merryman; Sanjay Vashee; Radha Krishnakumar; Nacyra Assad-Garcia; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Lei Young; Zhi-Qing Qi; Thomas H Segall-Shapiro; Christopher H Calvey; Prashanth P Parmar; Clyde A Hutchison; Hamilton O Smith; J Craig Venter
Journal: Science Date: 2010-05-20 Impact factor: 47.728

7. Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry.

Authors: Bing Luo; Karsten Groenke; Ralf Takors; Christian Wandrey; Marco Oldiges
Journal: J Chromatogr A Date: 2007-02-16 Impact factor: 4.759

8. Integration of systems biology with bioprocess engineering: L: -threonine production by systems metabolic engineering of Escherichia coli.

Authors: Sang Yup Lee; Jin Hwan Park
Journal: Adv Biochem Eng Biotechnol Date: 2010 Impact factor: 2.635

9. Identification and characterization of the furfural and 5-(hydroxymethyl)furfural degradation pathways of Cupriavidus basilensis HMF14.

Authors: Frank Koopman; Nick Wierckx; Johannes H de Winde; Harald J Ruijssenaars
Journal: Proc Natl Acad Sci U S A Date: 2010-03-01 Impact factor: 11.205

10. Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis.

Authors: Takuya Morimoto; Ryosuke Kadoya; Keiji Endo; Masatoshi Tohata; Kazuhisa Sawada; Shengao Liu; Tadahiro Ozawa; Takeko Kodama; Hiroshi Kakeshita; Yasushi Kageyama; Kenji Manabe; Shigehiko Kanaya; Katsutoshi Ara; Katsuya Ozaki; Naotake Ogasawara
Journal: DNA Res Date: 2008-03-11 Impact factor: 4.458

24 in total

1. proTeOn and proTeOff, new protein devices that inducibly activate bacterial gene expression.

Authors: Katherine Volzing; Konstantinos Biliouris; Yiannis N Kaznessis
Journal: ACS Chem Biol Date: 2011-08-18 Impact factor: 5.100

2. The functional structure of central carbon metabolism in Pseudomonas putida KT2440.

Authors: Suresh Sudarsan; Sarah Dethlefsen; Lars M Blank; Martin Siemann-Herzberg; Andreas Schmid
Journal: Appl Environ Microbiol Date: 2014-06-20 Impact factor: 4.792

Review 3. The Synthetic Biology Toolkit for Photosynthetic Microorganisms.

Authors: Konstantinos Vavitsas; Pierre Crozet; Marcos Hamborg Vinde; Fiona Davies; Stéphane D Lemaire; Claudia E Vickers
Journal: Plant Physiol Date: 2019-07-01 Impact factor: 8.340

Review 4. Systems biology perspectives on minimal and simpler cells.

Authors: Joana C Xavier; Kiran Raosaheb Patil; Isabel Rocha
Journal: Microbiol Mol Biol Rev Date: 2014-09 Impact factor: 11.056

Review 5. Synthetic Morphogenesis.

Authors: Brian P Teague; Patrick Guye; Ron Weiss
Journal: Cold Spring Harb Perspect Biol Date: 2016-09-01 Impact factor: 10.005

6. The minimal genome comes of age.

Authors: Claudia E Vickers
Journal: Nat Biotechnol Date: 2016-06-09 Impact factor: 54.908

7. Controlling heterologous gene expression in yeast cell factories on different carbon substrates and across the diauxic shift: a comparison of yeast promoter activities.

Authors: Bingyin Peng; Thomas C Williams; Matthew Henry; Lars K Nielsen; Claudia E Vickers
Journal: Microb Cell Fact Date: 2015-06-26 Impact factor: 5.328

8. In silico method for modelling metabolism and gene product expression at genome scale.

Authors: Joshua A Lerman; Daniel R Hyduke; Haythem Latif; Vasiliy A Portnoy; Nathan E Lewis; Jeffrey D Orth; Alexandra C Schrimpe-Rutledge; Richard D Smith; Joshua N Adkins; Karsten Zengler; Bernhard O Palsson
Journal: Nat Commun Date: 2012-07-03 Impact factor: 14.919

9. Model-guided development of an evolutionarily stable yeast chassis.

Authors: Filipa Pereira; Helder Lopes; Paulo Maia; Britta Meyer; Justyna Nocon; Paula Jouhten; Dimitrios Konstantinidis; Eleni Kafkia; Miguel Rocha; Peter Kötter; Isabel Rocha; Kiran R Patil
Journal: Mol Syst Biol Date: 2021-07 Impact factor: 11.429

10. From essential to persistent genes: a functional approach to constructing synthetic life.

Authors: Carlos G Acevedo-Rocha; Gang Fang; Markus Schmidt; David W Ussery; Antoine Danchin
Journal: Trends Genet Date: 2012-12-06 Impact factor: 11.639