Literature DB >> 21073976

FungiFun: a web-based application for functional categorization of fungal genes and proteins.

Steffen Priebe1, Jörg Linde, Daniela Albrecht, Reinhard Guthke, Axel A Brakhage.   

Abstract

FungiFun assigns functional annotations to fungal genes or proteins and performs gene set enrichment analysis. Based on three different classification methods (FunCat, GO and KEGG), FungiFun categorizes genes and proteins for several fungal species on different levels of annotation detail. It is web-based and accessible to users without any programming skills. FungiFun is the first tool offering gene set enrichment analysis including the FunCat categorization. Two biological datasets for Aspergillus fumigatus and Candida albicans were analyzed using FungiFun, providing an overview of the usage and functions of the tool. FungiFun is freely accessible at https://www.omnifung.hki-jena.de/FungiFun/.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID： 21073976     DOI： 10.1016/j.fgb.2010.11.001

Source DB:  PubMed          Journal:  Fungal Genet Biol        ISSN： 1087-1845            Impact factor:   3.495


  46 in total

1.  The Aspergillus nidulans metZ gene encodes a transcription factor involved in regulation of sulfur metabolism in this fungus and other Eurotiales.

Authors:  Sebastian Piłsyk; Renata Natorff; Marzena Sieńko; Marek Skoneczny; Andrzej Paszewski; Jerzy Brzywczy
Journal:  Curr Genet       Date:  2014-11-13       Impact factor: 3.886

2.  Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.

Authors:  Jennifer M Hurley; Arko Dasgupta; Jillian M Emerson; Xiaoying Zhou; Carol S Ringelberg; Nicole Knabe; Anna M Lipzen; Erika A Lindquist; Christopher G Daum; Kerrie W Barry; Igor V Grigoriev; Kristina M Smith; James E Galagan; Deborah Bell-Pedersen; Michael Freitag; Chao Cheng; Jennifer J Loros; Jay C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-31       Impact factor: 11.205

3.  Interplay between Gliotoxin Resistance, Secretion, and the Methyl/Methionine Cycle in Aspergillus fumigatus.

Authors:  Rebecca A Owens; Grainne O'Keeffe; Elizabeth B Smith; Stephen K Dolan; Stephen Hammel; Kevin J Sheridan; David A Fitzpatrick; Thomas M Keane; Gary W Jones; Sean Doyle
Journal:  Eukaryot Cell       Date:  2015-07-06

Review 4.  Regulation of fungal secondary metabolism.

Authors:  Axel A Brakhage
Journal:  Nat Rev Microbiol       Date:  2012-11-26       Impact factor: 60.633

5.  Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.

Authors:  Jennifer M Hurley; Meaghan S Jankowski; Hannah De Los Santos; Alexander M Crowell; Samuel B Fordyce; Jeremy D Zucker; Neeraj Kumar; Samuel O Purvine; Errol W Robinson; Anil Shukla; Erika Zink; William R Cannon; Scott E Baker; Jennifer J Loros; Jay C Dunlap
Journal:  Cell Syst       Date:  2018-12-12       Impact factor: 10.304

6.  Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide.

Authors:  Kathrin Schmeisser; Johannes Mansfeld; Doreen Kuhlow; Sandra Weimer; Steffen Priebe; Ines Heiland; Marc Birringer; Marco Groth; Alexandra Segref; Yariv Kanfi; Nathan L Price; Sebastian Schmeisser; Stefan Schuster; Andreas F H Pfeiffer; Reinhard Guthke; Matthias Platzer; Thorsten Hoppe; Haim Y Cohen; Kim Zarse; David A Sinclair; Michael Ristow
Journal:  Nat Chem Biol       Date:  2013-09-29       Impact factor: 15.040

Review 7.  Saccharomyces cerevisiae as a tool for mining, studying and engineering fungal polyketide synthases.

Authors:  Carly Bond; Yi Tang; Li Li
Journal:  Fungal Genet Biol       Date:  2016-02-02       Impact factor: 3.495

8.  Disparate proteome responses of pathogenic and nonpathogenic aspergilli to human serum measured by activity-based protein profiling (ABPP).

Authors:  Susan D Wiedner; Charles Ansong; Bobbie-Jo Webb-Robertson; LeeAnna M Pederson; Suereta Fortuin; Beth A Hofstad; Anil K Shukla; Ellen A Panisko; Richard D Smith; Aaron T Wright
Journal:  Mol Cell Proteomics       Date:  2013-04-18       Impact factor: 5.911

9.  Neuronal ROS signaling rather than AMPK/sirtuin-mediated energy sensing links dietary restriction to lifespan extension.

Authors:  Sebastian Schmeisser; Steffen Priebe; Marco Groth; Shamci Monajembashi; Peter Hemmerich; Reinhard Guthke; Matthias Platzer; Michael Ristow
Journal:  Mol Metab       Date:  2013-02-14       Impact factor: 7.422

10.  Multiplexed activity-based protein profiling of the human pathogen Aspergillus fumigatus reveals large functional changes upon exposure to human serum.

Authors:  Susan D Wiedner; Kristin E Burnum; LeeAnna M Pederson; Lindsey N Anderson; Suereta Fortuin; Lacie M Chauvigné-Hines; Anil K Shukla; Charles Ansong; Ellen A Panisko; Richard D Smith; Aaron T Wright
Journal:  J Biol Chem       Date:  2012-08-03       Impact factor: 5.157
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