Literature DB >> 21068304

Toward the second generation of optogenetic tools.

Thomas Knöpfel1, Michael Z Lin, Anselm Levskaya, Lin Tian, John Y Lin, Edward S Boyden.   

Abstract

This mini-symposium aims to provide an integrated perspective on recent developments in optogenetics. Research in this emerging field combines optical methods with targeted expression of genetically encoded, protein-based probes to achieve experimental manipulation and measurement of neural systems with superior temporal and spatial resolution. The essential components of the optogenetic toolbox consist of two kinds of molecular devices: actuators and reporters, which respectively enable light-mediated control or monitoring of molecular processes. The first generation of genetically encoded calcium reporters, fluorescent proteins, and neural activators has already had a great impact on neuroscience. Now, a second generation of voltage reporters, neural silencers, and functionally extended fluorescent proteins hold great promise for continuing this revolution. In this review, we will evaluate and highlight the limitations of presently available optogenic tools and discuss where these technologies and their applications are headed in the future.

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Year:  2010        PMID: 21068304      PMCID: PMC2997431          DOI: 10.1523/JNEUROSCI.4190-10.2010

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.167


  58 in total

1.  Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin.

Authors:  Xiang Li; Davina V Gutierrez; M Gartz Hanson; Jing Han; Melanie D Mark; Hillel Chiel; Peter Hegemann; Lynn T Landmesser; Stefan Herlitze
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-23       Impact factor: 11.205

2.  Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses.

Authors:  Georg Nagel; Martin Brauner; Jana F Liewald; Nona Adeishvili; Ernst Bamberg; Alexander Gottschalk
Journal:  Curr Biol       Date:  2005-12-20       Impact factor: 10.834

3.  Multimodal fast optical interrogation of neural circuitry.

Authors:  Feng Zhang; Li-Ping Wang; Martin Brauner; Jana F Liewald; Kenneth Kay; Natalie Watzke; Phillip G Wood; Ernst Bamberg; Georg Nagel; Alexander Gottschalk; Karl Deisseroth
Journal:  Nature       Date:  2007-04-05       Impact factor: 49.962

4.  Imaging brain electric signals with genetically targeted voltage-sensitive fluorescent proteins.

Authors:  Walther Akemann; Hiroki Mutoh; Amélie Perron; Jean Rossier; Thomas Knöpfel
Journal:  Nat Methods       Date:  2010-07-11       Impact factor: 28.547

5.  Optical recording of neuronal activity with a genetically-encoded calcium indicator in anesthetized and freely moving mice.

Authors:  Henry Lütcke; Masanori Murayama; Thomas Hahn; David J Margolis; Simone Astori; Stephan Meyer Zum Alten Borgloh; Werner Göbel; Ying Yang; Wannan Tang; Sebastian Kügler; Rolf Sprengel; Takeharu Nagai; Atsushi Miyawaki; Matthew E Larkum; Fritjof Helmchen; Mazahir T Hasan
Journal:  Front Neural Circuits       Date:  2010-04-29       Impact factor: 3.492

6.  Conversion of red fluorescent protein into a bright blue probe.

Authors:  Oksana M Subach; Illia S Gundorov; Masami Yoshimura; Fedor V Subach; Jinghang Zhang; David Grüenwald; Ekaterina A Souslova; Dmitriy M Chudakov; Vladislav V Verkhusha
Journal:  Chem Biol       Date:  2008-10-20

7.  Exploration of new chromophore structures leads to the identification of improved blue fluorescent proteins.

Authors:  Hui-wang Ai; Nathan C Shaner; Zihao Cheng; Roger Y Tsien; Robert E Campbell
Journal:  Biochemistry       Date:  2007-04-20       Impact factor: 3.162

8.  Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.

Authors:  Georg Nagel; Tanjef Szellas; Wolfram Huhn; Suneel Kateriya; Nona Adeishvili; Peter Berthold; Doris Ollig; Peter Hegemann; Ernst Bamberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

9.  A genetically encoded calcium indicator for chronic in vivo two-photon imaging.

Authors:  Marco Mank; Alexandre Ferrão Santos; Stephan Direnberger; Thomas D Mrsic-Flogel; Sonja B Hofer; Valentin Stein; Thomas Hendel; Dierk F Reiff; Christiaan Levelt; Alexander Borst; Tobias Bonhoeffer; Mark Hübener; Oliver Griesbeck
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

10.  Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome.

Authors:  Xiaokun Shu; Antoine Royant; Michael Z Lin; Todd A Aguilera; Varda Lev-Ram; Paul A Steinbach; Roger Y Tsien
Journal:  Science       Date:  2009-05-08       Impact factor: 47.728

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  45 in total

Review 1.  Controlling the elements: an optogenetic approach to understanding the neural circuits of fear.

Authors:  Joshua P Johansen; Steffen B E Wolff; Andreas Lüthi; Joseph E LeDoux
Journal:  Biol Psychiatry       Date:  2011-12-14       Impact factor: 13.382

Review 2.  Optogenetic tools for modulating and probing the epileptic network.

Authors:  Mingrui Zhao; Rose Alleva; Hongtao Ma; Andy G S Daniel; Theodore H Schwartz
Journal:  Epilepsy Res       Date:  2015-06-21       Impact factor: 3.045

Review 3.  "Beauty is a light in the heart": the transformative potential of optogenetics for clinical applications in cardiovascular medicine.

Authors:  Patrick M Boyle; Thomas V Karathanos; Natalia A Trayanova
Journal:  Trends Cardiovasc Med       Date:  2014-10-16       Impact factor: 6.677

Review 4.  Optogenetics: the new molecular approach to control functions of neural cells in epilepsy, depression and tumors of the central nervous system.

Authors:  Bruno Camporeze; Bruno Alcântara Manica; Gabriel Alves Bonafé; Jivago Jordão Camargos Ferreira; Aurélio Lourenço Diniz; Carlos Tadeu Parisi de Oliveira; Luis Roberto Mathias Junior; Paulo Henrique Pires de Aguiar; Manoela Marques Ortega
Journal:  Am J Cancer Res       Date:  2018-10-01       Impact factor: 6.166

Review 5.  Shining light on wakefulness and arousal.

Authors:  Luis de Lecea; Matthew E Carter; Antoine Adamantidis
Journal:  Biol Psychiatry       Date:  2012-03-20       Impact factor: 13.382

6.  A toolset of aequorin expression vectors for in planta studies of subcellular calcium concentrations in Arabidopsis thaliana.

Authors:  Norbert Mehlmer; Nargis Parvin; Charlotte H Hurst; Marc R Knight; Markus Teige; Ute C Vothknecht
Journal:  J Exp Bot       Date:  2012-01-02       Impact factor: 6.992

Review 7.  Optogenetic reporters: Fluorescent protein-based genetically encoded indicators of signaling and metabolism in the brain.

Authors:  Mathew Tantama; Yin Pun Hung; Gary Yellen
Journal:  Prog Brain Res       Date:  2012       Impact factor: 2.453

8.  A theory of the transition to critical period plasticity: inhibition selectively suppresses spontaneous activity.

Authors:  Taro Toyoizumi; Hiroyuki Miyamoto; Yoko Yazaki-Sugiyama; Nafiseh Atapour; Takao K Hensch; Kenneth D Miller
Journal:  Neuron       Date:  2013-10-02       Impact factor: 17.173

9.  The BioLuminescent-OptoGenetic in vivo response to coelenterazine is proportional, sensitive, and specific in neocortex.

Authors:  Manuel Gomez-Ramirez; Alexander I More; Nina G Friedman; Ute Hochgeschwender; Christopher I Moore
Journal:  J Neurosci Res       Date:  2019-09-23       Impact factor: 4.164

Review 10.  An Inconvenient Truth: Calcium Sensors Are Calcium Buffers.

Authors:  Shane M McMahon; Meyer B Jackson
Journal:  Trends Neurosci       Date:  2018-10-01       Impact factor: 13.837

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