| Literature DB >> 21067570 |
Aihua Sun1, Xingli Fan, Ye Gu, Peng Du, Renxian Tang, Yafei Mao, Xuai Lin, Jie Yan.
Abstract
BACKGROUND: Variations of porB1A and porB1B genes and their serotypes exist in Neisseria gonorrhoeae isolates from different geographical areas, and some site mutations in the porB1B gene correlate with drug resistance.Entities:
Mesh:
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Year: 2010 PMID: 21067570 PMCID: PMC2992536 DOI: 10.1186/1471-2334-10-323
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Primer sequences used in PCR for amplifying porB1A and porB1B genes
| Primers | Sequences (5' to 3')* | Products and sizes |
|---|---|---|
| porB1A/1B | F: ATGAAAAAATCCCTGATTGCC | 981 bp for entire |
| R: TTAGAATTTGTGGCGCAGAAC | ||
| porB1A/1B-D | F1: GCCATTTGGCAGTTGGAACA | 520 bp for partial sequence of porB1A gene, and 201 bp and 583 bp for partial sequence of porB1B gene |
| F2: GATACGGCGAAGGCACTAAA | ||
| R: CTTCGGTTTGAGAGTTGTGC |
* F: forward primer, R: reverse primer
Figure 1Amplicons of entire or partial . Note: Lane M: DNA marker (BioColor); Lanes 1 and 2: amplicons of entire porB1A gene (981 bp) and porB1B gene (1044 bp), respectively; Lanes 3 and 4: amplicons of partial porB1A gene (520 bp) and partial porB1B gene (583 bp and 201 bp) by duplex PCR, respectively; Lane 5: blank control.
Figure 2Amino acid sequences from . Note: (IA6): reported amino acid sequence of IA6 serotype (GenBank accession No: L19962); (1) and (2): PorB1A sequences from 56 and 23 gonococcal isolates, respectively; (3) to (5): PorB1A sequences from 8 gonococcal isolates; (6) PorB1A sequences from 11 gonococcal isolates. Underlined areas indicate positions of primers.
Figure 3Amino acid sequences from . Note: (IB3), (IB3/6), (IB2) and (IB4): reported PorB1B sequences belonging to serotypes IB3 (GenBank accession No: U75639), IB3/6 (GenBank accession No: U75641), IB2 (GenBank No: U75640) and IB4 (GenBank No: AF090797), respectively; (1): PorB1B sequence from 58 gonococcal isolates referring to IB3 serotype; (2): PorB1B sequence from 49 gonococcal isolates referring to IB3/6 serotype (D means the 27 isolates with A121D mutation, the 19 isolates with A121G mutation and the remaining 3 isolates with no mutation at the A121 site); (3): PorB1B sequence from 62 gonococcal isolates referring to IB3/6-IB2 chimeric serotype without A121 and N122 deletion (K means the 53 strains with G120K mutation and the remaining 9 strains with G120N mutation); (4): PorB1B sequence from 15 gonococcal isolates referring to IB3/6-IB2 chimeric serotype with A121 and N122 deletions; (5): PorB1B sequence from 25 gonococcal isolates referring to IB4 serotype; (6): PorB1B sequence from 8 gonococcal isolates referring to IB2-IB4-IB2 chimeric serotype. Underlined areas indicate the positions of primers. The signal "/" means lack of the amino acid residue.
G120 and A121 mutations in PorB1A and PorB1B of N. gonorrhoeae isolates*
| Serotypes | Cases (n) | Site mutation patterns (n) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| G120K/A121D | G120K/A121G | G120N/A121D | G120D/A121G | G120D | G120K | G120N | A121G | ||
| IB3 | 56 | 56 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| IB3/6 | 46 | 27 | 19 | 0 | 0 | 0 | 0 | 0 | 0 |
| IB4 | 25 | 0 | 0 | 0 | 0 | 25 | 0 | 0 | 0 |
| IB3/6-IB2 | 62 | 44 | 0 | 9 | 0 | 0 | 9 | 0 | 0 |
| IB3/6-IB2# | 15 | 0 | 0 | 0 | 0 | 0 | 0 | 15 | 0 |
| IB2-IB4-IB2 | 8 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| IA6 | 98 | 0 | 0 | 0 | 87 | 0 | 0 | 0 | 11 |
| Total | 310 | 135 | 19 | 9 | 87 | 25 | 9 | 15 | 11 |
*: 5 isolates (3 for IB3/6 and 2 for IB3 serotypes) without G120 and A121 mutations not included. G, K, A, D and N indicate glycine, lysine, aspartic acid and asparagine, respectively. #: isolates with deletions of both A121 and N122.
MICs of penicillin and tetracycline for N. gonorrhoeae isolates
| Site mutations* | Serotypes | Cases (n) | MICs (mg/L) | |
|---|---|---|---|---|
| Penicillin | Tetracycline | |||
| G120K/A121D | IB3 | 56 | 2-4 | 2-8 |
| IB3/6 | 27 | 2-4 | 2-8 | |
| IB3/6-IB2 | 44 | 2-4 | 2-8 | |
| IB2-IB4-IB2 | 8 | 2-4 | 2-4 | |
| G120K/A121G | IB3/6 | 19 | 2-4 | 2-8 |
| G120N/A121D | IB3/6-IB2 | 9 | 2 | 2-4 |
| G120D | IB4 | 25 | 2-4 | 2-8 |
| G120K | IB3/6-IB2 | 9 | 2-4 | 2-8 |
| G120N/A121 and N122 deletion | IB3/6-IB2 | 15 | 4-8 | 4-16 |
| G120G/A121A | IB3/6 | 3 | 0.12 | 0.25 |
| IB3 | 2 | 0.25 | 0.25 | |
| D120D/G121G | IA6 | 87 | 0.06-0.5 | 0.06-0.5 |
| D120G/G121G | IA6 | 11 | 0.12-0.25 | 0.12-1 |
*: G, K, A, D and N indicate glycine, lysine, aspartic acid and asparagine, respectively.