Literature DB >> 21057919

In situ labeling of DNA breaks and apoptosis by T7 DNA polymerase.

Vladimir V Didenko1.   

Abstract

The native T7 DNA polymerase is a fast and highly processive enzyme that can be used for in situ detection of apoptosis and various types of DNA breaks. The technique is quick and simple, and was shown to label earlier stages of apoptosis compared to the terminal transferase technique. The in situ labeling applications of T7 DNA polymerase are presented and summarized from the DNA damage detection standpoint. The detailed protocols are provided together with the discussion of their advantages and limitations.

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Year:  2011        PMID: 21057919      PMCID: PMC3324588          DOI: 10.1007/978-1-60327-409-8_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  28 in total

1.  In situ detection of activated caspase-3 in apoptotic granule neurons in the developing cerebellum in slice cultures and in vivo.

Authors:  M Tanaka; T Momoi; T Marunouchi
Journal:  Brain Res Dev Brain Res       Date:  2000-06-30

Review 2.  Apoptotic DNA fragmentation and tissue homeostasis.

Authors:  Jianhua Zhang; Ming Xu
Journal:  Trends Cell Biol       Date:  2002-02       Impact factor: 20.808

Review 3.  Cell death in fetal oocytes: many players for multiple pathways.

Authors:  Massimo De Felici; Anna Maria Lobascio; Francesca Gioia Klinger
Journal:  Autophagy       Date:  2007-12-12       Impact factor: 16.016

4.  Apoptotic DNA fragmentation is detected by a semi-quantitative ligation-mediated PCR of blunt DNA ends.

Authors:  K Staley; A J Blaschke; J Chun
Journal:  Cell Death Differ       Date:  1997-01       Impact factor: 15.828

5.  In situ labeling of granule cells for apoptosis-associated DNA fragmentation reveals different mechanisms of cell loss in developing cerebellum.

Authors:  K A Wood; B Dipasquale; R J Youle
Journal:  Neuron       Date:  1993-10       Impact factor: 17.173

6.  Early necrotic DNA degradation: presence of blunt-ended DNA breaks, 3' and 5' overhangs in apoptosis, but only 5' overhangs in early necrosis.

Authors:  Vladimir V Didenko; Hop Ngo; David S Baskin
Journal:  Am J Pathol       Date:  2003-05       Impact factor: 4.307

7.  Cleavage preferences of the apoptotic endonuclease DFF40 (caspase-activated DNase or nuclease) on naked DNA and chromatin substrates.

Authors:  P Widlak; P Li; X Wang; W T Garrard
Journal:  J Biol Chem       Date:  2000-03-17       Impact factor: 5.157

8.  Presence of double-strand breaks with single-base 3' overhangs in cells undergoing apoptosis but not necrosis.

Authors:  V V Didenko; P J Hornsby
Journal:  J Cell Biol       Date:  1996-12       Impact factor: 10.539

9.  Apoptosis in the early human placental bed and its discrimination from necrosis using the in-situ DNA ligation technique.

Authors:  R S Al-Lamki; J N Skepper; Y W Loke; A King; G J Burton
Journal:  Hum Reprod       Date:  1998-12       Impact factor: 6.918

10.  T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits.

Authors:  S Adler; P Modrich
Journal:  J Biol Chem       Date:  1979-11-25       Impact factor: 5.157

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  2 in total

1.  DNA damage measurements within tissue samples with Repair Assisted Damage Detection (RADD).

Authors:  Kevin J Lee; Elise Mann; Luciana Madeira da Silva; Jennifer Scalici; Natalie R Gassman
Journal:  Curr Res Biotechnol       Date:  2019-11-15

Review 2.  Targets for repair: detecting and quantifying DNA damage with fluorescence-based methodologies.

Authors:  Natalie R Gassman; Nathaniel W Holton
Journal:  Curr Opin Biotechnol       Date:  2018-08-13       Impact factor: 9.740

  2 in total

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