Literature DB >> 21046207

Prediction of similarities among rheumatic diseases.

Pinar Yildirim1, Cinar Ceken, Reza Hassanpour, Mehmet Resit Tolun.   

Abstract

We introduce a method for extracting hidden patterns seen in rheumatic diseases by using articles from the widely used biomedical database MEDLINE. Rheumatic diseases affect hundreds of millions of people worldwide and lead to substantial loss of functioning and mobility. Diagnosing rheumatic diseases can be difficult because some symptoms are common to many of them. We use Facta system as a biomedical text mining tool for finding symptoms and then create a dataset with the frequencies of symptoms for each disease and apply hierarchical clustering analysis to find similarities between diseases. Clustering analysis yields four distinct types or groups of rheumatic diseases. Although our results cannot remove all the uncertainty for the diagnosis of rheumatic diseases, we believe they can contribute to the diagnosis of rheumatic diseases to a certain extent. We hope that some similarities exposed can provide additional information at the stage of decision-making.

Entities:  

Mesh:

Year:  2010        PMID: 21046207     DOI: 10.1007/s10916-010-9609-6

Source DB:  PubMed          Journal:  J Med Syst        ISSN: 0148-5598            Impact factor:   4.460


  18 in total

1.  Using hierarchical cluster analysis in nursing research.

Authors:  Jason W Beckstead
Journal:  West J Nurs Res       Date:  2002-04       Impact factor: 1.967

2.  MedlineR: an open source library in R for Medline literature data mining.

Authors:  Simon M Lin; Patrick McConnell; Kimberly F Johnson; Jennifer Shoemaker
Journal:  Bioinformatics       Date:  2004-07-29       Impact factor: 6.937

Review 3.  A survey of current work in biomedical text mining.

Authors:  Aaron M Cohen; William R Hersh
Journal:  Brief Bioinform       Date:  2005-03       Impact factor: 11.622

Review 4.  Classification and diagnostic criteria in systemic vasculitis.

Authors:  Assil Saleh; John H Stone
Journal:  Best Pract Res Clin Rheumatol       Date:  2005-04       Impact factor: 4.098

5.  EBIMed--text crunching to gather facts for proteins from Medline.

Authors:  Dietrich Rebholz-Schuhmann; Harald Kirsch; Miguel Arregui; Sylvain Gaudan; Mark Riethoven; Peter Stoehr
Journal:  Bioinformatics       Date:  2007-01-15       Impact factor: 6.937

Review 6.  Fibromyalgia and myofascial pain syndromes and the workers' compensation environment: an update.

Authors:  Radford J Hayden; Dean S Louis; Christopher Doro
Journal:  Clin Occup Environ Med       Date:  2006

7.  Generalized osteoarthritis in women: pattern of joint involvement and approaches to definition for epidemiological studies.

Authors:  C Cooper; P Egger; D Coggon; D J Hart; T Masud; F Cicuttini; D V Doyle; T D Spector
Journal:  J Rheumatol       Date:  1996-11       Impact factor: 4.666

8.  Negotiating the diagnostic uncertainty of contested illnesses: physician practices and paradigms.

Authors:  Debra A Swoboda
Journal:  Health (London)       Date:  2008-10

9.  Prediction of disease severity in patients with early rheumatoid arthritis by gene expression profiling.

Authors:  Zheng Liu; Tuulikki Sokka; Kevin Maas; Nancy J Olsen; Thomas M Aune
Journal:  Hum Genomics Proteomics       Date:  2009-04-27

10.  Anni 2.0: a multipurpose text-mining tool for the life sciences.

Authors:  Rob Jelier; Martijn J Schuemie; Antoine Veldhoven; Lambert C J Dorssers; Guido Jenster; Jan A Kors
Journal:  Genome Biol       Date:  2008-06-12       Impact factor: 13.583

View more
  3 in total

1.  Mining MEDLINE for the treatment of osteoporosis.

Authors:  Pinar Yildirim; Cinar Ceken; Reza Hassanpour; Sadik Esmelioglu; Mehmet Resit Tolun
Journal:  J Med Syst       Date:  2011-04-15       Impact factor: 4.460

Review 2.  The basics of data, big data, and machine learning in clinical practice.

Authors:  David Soriano-Valdez; Ingris Pelaez-Ballestas; Amaranta Manrique de Lara; Alfonso Gastelum-Strozzi
Journal:  Clin Rheumatol       Date:  2020-06-05       Impact factor: 2.980

3.  Comparison of MetaMap and cTAKES for entity extraction in clinical notes.

Authors:  Ruth Reátegui; Sylvie Ratté
Journal:  BMC Med Inform Decis Mak       Date:  2018-09-14       Impact factor: 2.796

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.