Literature DB >> 32504192

The basics of data, big data, and machine learning in clinical practice.

David Soriano-Valdez1, Ingris Pelaez-Ballestas2, Amaranta Manrique de Lara3, Alfonso Gastelum-Strozzi4.   

Abstract

Health informatics and biomedical computing have introduced the use of computer methods to analyze clinical information and provide tools to assist clinicians during the diagnosis and treatment of diverse clinical conditions. With the amount of information that can be obtained in the healthcare setting, new methods to acquire, organize, and analyze the data are being developed each day, including new applications in the world of big data and machine learning. In this review, first we present the most basic concepts in data science, including the structural hierarchy of information and how it is managed. A section is dedicated to discussing topics relevant to the acquisition of data, importantly the availability and use of online resources such as survey software and cloud computing services. Along with digital datasets, these tools make it possible to create more diverse models and facilitate collaboration. After, we describe concepts and techniques in machine learning used to process and analyze health data, especially those most widely applied in rheumatology. Overall, the objective of this review is to aid in the comprehension of how data science is used in health, with a special emphasis on the relevance to the field of rheumatology. It provides clinicians with basic tools on how to approach and understand new trends in health informatics analysis currently being used in rheumatology practice. If clinicians understand the potential use and limitations of health informatics, this will facilitate interdisciplinary conversations and continued projects relating to data, big data, and machine learning.

Entities:  

Keywords:  Data analysis; Deep learning; Machine learning; Medical records analysis

Mesh:

Year:  2020        PMID: 32504192     DOI: 10.1007/s10067-020-05196-z

Source DB:  PubMed          Journal:  Clin Rheumatol        ISSN: 0770-3198            Impact factor:   2.980


  24 in total

Review 1.  Medical record confidentiality law, scientific research, and data collection in the information age.

Authors:  R C Turkington
Journal:  J Law Med Ethics       Date:  1997 Summer-Fall       Impact factor: 1.718

2.  Research strategies that result in optimal data collection from the patient medical record.

Authors:  Katherine E Gregory; Lucy Radovinsky
Journal:  Appl Nurs Res       Date:  2010-04-09       Impact factor: 2.257

3.  EULAR points to consider for the use of big data in rheumatic and musculoskeletal diseases.

Authors:  Laure Gossec; Joanna Kedra; Hervé Servy; Aridaman Pandit; Simon Stones; Francis Berenbaum; Axel Finckh; Xenofon Baraliakos; Tanja A Stamm; David Gomez-Cabrero; Christian Pristipino; Remy Choquet; Gerd R Burmester; Timothy R D J Radstake
Journal:  Ann Rheum Dis       Date:  2019-06-22       Impact factor: 19.103

4.  Methods to achieve high interrater reliability in data collection from primary care medical records.

Authors:  Clare Liddy; Miriam Wiens; William Hogg
Journal:  Ann Fam Med       Date:  2011 Jan-Feb       Impact factor: 5.166

Review 5.  Security and privacy in electronic health records: a systematic literature review.

Authors:  José Luis Fernández-Alemán; Inmaculada Carrión Señor; Pedro Ángel Oliver Lozoya; Ambrosio Toval
Journal:  J Biomed Inform       Date:  2013-01-08       Impact factor: 6.317

6.  Ethics, information technology, and public health: new challenges for the clinician-patient relationship.

Authors:  Kenneth W Goodman
Journal:  J Law Med Ethics       Date:  2010       Impact factor: 1.718

Review 7.  Big data and data processing in rheumatology: bioethical perspectives.

Authors:  Amaranta Manrique de Lara; Ingris Peláez-Ballestas
Journal:  Clin Rheumatol       Date:  2020-02-15       Impact factor: 2.980

8.  Assessment of the completeness and accuracy of computer medical records in four practices committed to recording data on computer.

Authors:  M Pringle; P Ward; C Chilvers
Journal:  Br J Gen Pract       Date:  1995-10       Impact factor: 5.386

9.  Response rate and completeness of questionnaires: a randomized study of Internet versus paper-and-pencil versions.

Authors:  Sissel Marie Kongsved; Maja Basnov; Kurt Holm-Christensen; Niels Henrik Hjollund
Journal:  J Med Internet Res       Date:  2007-09-30       Impact factor: 5.428

10.  ForceAtlas2, a continuous graph layout algorithm for handy network visualization designed for the Gephi software.

Authors:  Mathieu Jacomy; Tommaso Venturini; Sebastien Heymann; Mathieu Bastian
Journal:  PLoS One       Date:  2014-06-10       Impact factor: 3.240

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  3 in total

1.  Cardiovascular disease detection using machine learning and carotid/femoral arterial imaging frameworks in rheumatoid arthritis patients.

Authors:  George Konstantonis; Krishna V Singh; Petros P Sfikakis; Ankush D Jamthikar; George D Kitas; Suneet K Gupta; Luca Saba; Kleio Verrou; Narendra N Khanna; Zoltan Ruzsa; Aditya M Sharma; John R Laird; Amer M Johri; Manudeep Kalra; Athanasios Protogerou; Jasjit S Suri
Journal:  Rheumatol Int       Date:  2022-01-11       Impact factor: 2.631

2.  MaD GUI: An Open-Source Python Package for Annotation and Analysis of Time-Series Data.

Authors:  Malte Ollenschläger; Arne Küderle; Wolfgang Mehringer; Ann-Kristin Seifer; Jürgen Winkler; Heiko Gaßner; Felix Kluge; Bjoern M Eskofier
Journal:  Sensors (Basel)       Date:  2022-08-05       Impact factor: 3.847

Review 3.  Predictive models for clinical decision making: Deep dives in practical machine learning.

Authors:  Sandra Eloranta; Magnus Boman
Journal:  J Intern Med       Date:  2022-04-25       Impact factor: 13.068

  3 in total

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