Literature DB >> 21045308

Crystallization and preliminary X-ray analysis of a novel dye-linked L-proline dehydrogenase from the aerobic hyperthermophilic archaeon Aeropyrum pernix.

Takenori Satomura1, Haruhiko Sakuraba, Yusuke Hara, Toshihisa Ohshima.   

Abstract

A novel dye-linked L-proline dehydrogenase from the aerobic hyperthermophilic archaeon Aeropyrum pernix was crystallized using the sitting-drop vapour-diffusion method with polyethylene glycol 8000 as the precipitant. The crystals belonged to the tetragonal space group P4(1)2(1)2 or its enantiomorph P4(3)2(1)2, with unit-cell parameters a = b = 61.1, c = 276.3 Å, and diffracted to 2.87 Å resolution using a Cu Kα rotating-anode generator with an R-AXIS VII detector. The asymmetric unit contained one protein molecule, giving a crystal volume per enzyme mass (V(M)) of 2.75 Å(3) Da(-1) and a solvent content of 55.3%.

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Year:  2010        PMID: 21045308      PMCID: PMC3001661          DOI: 10.1107/S1744309110036808

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  8 in total

1.  Purification, characterization, and application of a novel dye-linked L-proline dehydrogenase from a hyperthermophilic archaeon, Thermococcus profundus.

Authors:  H Sakuraba; Y Takamatsu; T Satomura; R Kawakami; T Ohshima
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

2.  Gene and primary structures of dye-linked L-proline dehydrogenase from the hyperthermophilic archaeon Thermococcus profundus show the presence of a novel heterotetrameric amino acid dehydrogenase complex.

Authors:  Ryushi Kawakami; Haruhiko Sakuraba; Toshihisa Ohshima
Journal:  Extremophiles       Date:  2003-12-12       Impact factor: 2.395

3.  Crystal structure of a novel FAD-, FMN-, and ATP-containing L-proline dehydrogenase complex from Pyrococcus horikoshii.

Authors:  Hideaki Tsuge; Ryushi Kawakami; Haruhiko Sakuraba; Hideo Ago; Masashi Miyano; Kenji Aki; Nobuhiko Katunuma; Toshihisa Ohshima
Journal:  J Biol Chem       Date:  2005-07-15       Impact factor: 5.157

4.  Dye-linked D-proline dehydrogenase from hyperthermophilic archaeon Pyrobaculum islandicum is a novel FAD-dependent amino acid dehydrogenase.

Authors:  Takenori Satomura; Ryushi Kawakami; Haruhiko Sakuraba; Toshihisa Ohshima
Journal:  J Biol Chem       Date:  2002-01-31       Impact factor: 5.157

5.  Electrochemical biosensors.

Authors:  J E Frew; H A Hill
Journal:  Anal Chem       Date:  1987-08-01       Impact factor: 6.986

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  A second novel dye-linked L-proline dehydrogenase complex is present in the hyperthermophilic archaeon Pyrococcus horikoshii OT-3.

Authors:  Ryushi Kawakami; Haruhiko Sakuraba; Hideaki Tsuge; Shuichiro Goda; Nobuhiko Katunuma; Toshihisa Ohshima
Journal:  FEBS J       Date:  2005-08       Impact factor: 5.542

8.  A novel flavin adenine dinucleotide (FAD) containing d-lactate dehydrogenase from the thermoacidophilic crenarchaeota Sulfolobus tokodaii strain 7: purification, characterization and expression in Escherichia coli.

Authors:  Takenori Satomura; Ryushi Kawakami; Haruhiko Sakuraba; Toshihisa Ohshima
Journal:  J Biosci Bioeng       Date:  2008-07       Impact factor: 2.894

  8 in total
  1 in total

1.  Crystal structure of novel dye-linked L-proline dehydrogenase from hyperthermophilic archaeon Aeropyrum pernix.

Authors:  Haruhiko Sakuraba; Takenori Satomura; Ryushi Kawakami; Kwang Kim; Yusuke Hara; Kazunari Yoneda; Toshihisa Ohshima
Journal:  J Biol Chem       Date:  2012-04-16       Impact factor: 5.157

  1 in total

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