Literature DB >> 21038927

Electronic structure and spectroscopy of nucleic acid bases: ionization energies, ionization-induced structural changes, and photoelectron spectra.

Ksenia B Bravaya1, Oleg Kostko, Stanislav Dolgikh, Arie Landau, Musahid Ahmed, Anna I Krylov.   

Abstract

We report high-level ab initio calculations and single-photon ionization mass spectrometry study of ionization of adenine (A), thymine (T), cytosine (C), and guanine (G). For thymine and adenine, only the lowest-energy tautomers were considered, whereas for cytosine and guanine we characterized the five lowest-energy tautomeric forms. The first adiabatic and several vertical ionization energies were computed using the equation-of-motion coupled-cluster method for ionization potentials with single and double substitutions. Equilibrium structures of the cationic ground states were characterized by DFT with the ωB97X-D functional. The ionization-induced geometry changes of the bases are consistent with the shapes of the corresponding molecular orbitals. For the lowest-energy tautomers, the magnitude of the structural relaxation decreases in the following series, G > C > A > T, the respective relaxation energies being 0.41, 0.32, 0.25, and 0.20 eV. The computed adiabatic ionization energies (8.13, 8.89, 8.51-8.67, and 7.75-7.87 eV for A, T, C, and G, respectively) agree well with the onsets of the photoionization efficiency (PIE) curves (8.20 ± 0.05, 8.95 ± 0.05, 8.60 ± 0.05, and 7.75 ± 0.05 eV). Vibrational progressions for the S(0)-D(0) vibronic bands computed within double-harmonic approximation with Duschinsky rotations are compared with previously reported experimental photoelectron spectra and differentiated PIE curves.

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Year:  2010        PMID: 21038927     DOI: 10.1021/jp1063726

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

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6.  Nonempirically Tuned Range-Separated DFT Accurately Predicts Both Fundamental and Excitation Gaps in DNA and RNA Nucleobases.

Authors:  Michael E Foster; Bryan M Wong
Journal:  J Chem Theory Comput       Date:  2012-07-02       Impact factor: 6.006

7.  Guanine holes are prominent targets for mutation in cancer and inherited disease.

Authors:  Albino Bacolla; Nuri A Temiz; Ming Yi; Joseph Ivanic; Regina Z Cer; Duncan E Donohue; Edward V Ball; Uma S Mudunuri; Guliang Wang; Aklank Jain; Natalia Volfovsky; Brian T Luke; Robert M Stephens; David N Cooper; Jack R Collins; Karen M Vasquez
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  7 in total

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