Literature DB >> 21037015

Draft genome sequence of the anoxygenic filamentous phototrophic bacterium Oscillochloris trichoides subsp. DG-6.

Boris B Kuznetsov1, Ruslan N Ivanovsky, Olga I Keppen, Marina V Sukhacheva, Boris K Bumazhkin, Ekaterina O Patutina, Alexey V Beletsky, Andrey V Mardanov, Roman V Baslerov, Angela N Panteleeva, Tatjana V Kolganova, Nikolai V Ravin, Konstantin G Skryabin.   

Abstract

Oscillochloris trichoides is a mesophilic, filamentous, photoautotrophic, nonsulfur, diazotrophic bacterium which is capable of carbon dioxide fixation via the reductive pentose phosphate cycle and possesses no assimilative sulfate reduction. Here, we present the draft genome sequence of Oscillochloris trichoides subsp. DG-6, the type strain of the species, which has permitted the prediction of genes for carbon and nitrogen metabolism and for the light-harvesting apparatus.

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Year:  2010        PMID： 21037015      PMCID： PMC3019936          DOI： 10.1128/JB.00931-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Proposal of Oscillochloridaceae fam. nov. on the basis of a phylogenetic analysis of the filamentous anoxygenic phototrophic bacteria, and emended description of Oscillochloris and Oscillochloris trichoides in comparison with further new isolates.

Authors:  O I Keppen; T P Tourova; B B Kuznetsov; R N Ivanovsky; V M Gorlenko
Journal:  Int J Syst Evol Microbiol       Date:  2000-07       Impact factor: 2.747

2.  [Phylogeny of anoxygenic filamentous phototrophic bacteria of the family Oscillochloridaceae as inferred from comparative analyses of the rrs, cbbL, and nifH genes].

Authors:  T P Turova; E M Spiridonova; N V Slobodova; E S Bulygina; O I Keppen; B B Kuznetsov; R N Ivanovskiĭ
Journal:  Mikrobiologiia       Date:  2006 Mar-Apr

Review 3.  Organization and regulation of cbb CO2 assimilation genes in autotrophic bacteria.

Authors:  B Kusian; B Bowien
Journal:  FEMS Microbiol Rev       Date:  1997-09       Impact factor: 16.408

4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

5.  Assembling genomic DNA sequences with PHRAP.

Authors:  Melissa de la Bastide; W Richard McCombie
Journal:  Curr Protoc Bioinformatics       Date:  2007-03

6.  Viewing and editing assembled sequences using Consed.

Authors:  David Gordon
Journal:  Curr Protoc Bioinformatics       Date:  2003-08

7.  Evidence for the presence of the reductive pentose phosphate cycle in a filamentous anoxygenic photosynthetic bacterium, Oscillochloris trichoides strain DG-6.

Authors:  R N Ivanovsky; Y I Fal; I A Berg; N V Ugolkova; E N Krasilnikova; O I Keppen; L M Zakharchuc; A M Zyakun
Journal:  Microbiology       Date:  1999-07       Impact factor: 2.777

8.  Oscillochloris trichoides neotype strain DG-6.

Authors:  O I Keppen; O I Baulina; E N Kondratieva
Journal:  Photosynth Res       Date:  1994-07       Impact factor: 3.573

9.  Ribulose bisphosphate carboxylase activity and a Calvin cycle gene cluster in Sulfobacillus species.

Authors:  Paul E Caldwell; Martin R MacLean; Paul R Norris
Journal:  Microbiology       Date:  2007-07       Impact factor: 2.777
  9 in total
  7 in total

1.  Coassimilation of organic substrates via the autotrophic 3-hydroxypropionate bi-cycle in Chloroflexus aurantiacus.

Authors:  Jan Zarzycki; Georg Fuchs
Journal:  Appl Environ Microbiol       Date:  2011-07-15       Impact factor: 4.792

2.  Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring.

Authors:  Christian G Klatt; Zhenfeng Liu; Marcus Ludwig; Michael Kühl; Sheila I Jensen; Donald A Bryant; David M Ward
Journal:  ISME J       Date:  2013-04-11       Impact factor: 10.302

3.  Evolutionary Implications of Anoxygenic Phototrophy in the Bacterial Phylum Candidatus Eremiobacterota (WPS-2).

Authors:  Lewis M Ward; Tanai Cardona; Hannah Holland-Moritz
Journal:  Front Microbiol       Date:  2019-07-23       Impact factor: 5.640

4.  Geochemical and Metagenomic Characterization of Jinata Onsen, a Proterozoic-Analog Hot Spring, Reveals Novel Microbial Diversity including Iron-Tolerant Phototrophs and Thermophilic Lithotrophs.

Authors:  Lewis M Ward; Airi Idei; Mayuko Nakagawa; Yuichiro Ueno; Woodward W Fischer; Shawn E McGlynn
Journal:  Microbes Environ       Date:  2019-08-14       Impact factor: 2.912

5.  Genome Sequence of "Candidatus Viridilinea halotolerans" Chok-6, Isolated from a Saline Sulfide-Rich Spring.

Authors:  Denis S Grouzdev; Ekaterina I Burganskaya; Maria S Krutkina; Marina V Sukhacheva; Vladimir M Gorlenko
Journal:  Microbiol Resour Announc       Date:  2019-01-24

6.  Control of temperature on microbial community structure in hot springs of the Tibetan Plateau.

Authors:  Shang Wang; Weiguo Hou; Hailiang Dong; Hongchen Jiang; Liuqin Huang; Geng Wu; Chuanlun Zhang; Zhaoqi Song; Yong Zhang; Huilei Ren; Jing Zhang; Li Zhang
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

7.  Thermophilic bacterial communities inhabiting the microbial mats of "indifferent" and chalybeate (iron-rich) thermal springs: Diversity and biotechnological analysis.

Authors:  Ramganesh Selvarajan; Timothy Sibanda; Memory Tekere
Journal:  Microbiologyopen       Date:  2017-12-15       Impact factor: 3.139
  7 in total

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