Literature DB >> 21037011

Complete genome sequence of Bifidobacterium bifidum S17.

Daria Zhurina1, Aldert Zomer, Marita Gleinser, Vincenco Francesco Brancaccio, Marc Auchter, Mark S Waidmann, Christina Westermann, Douwe van Sinderen, Christian U Riedel.   

Abstract

Here, we report on the first completely annotated genome sequence of a Bifidobacterium bifidum strain. B. bifidum S17, isolated from feces of a breast-fed infant, was shown to strongly adhere to intestinal epithelial cells and has potent anti-inflammatory activity in vitro and in vivo. The genome sequence will provide new insights into the biology of this potential probiotic organism and allow for the characterization of the molecular mechanisms underlying its beneficial properties.

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Year:  2010        PMID: 21037011      PMCID: PMC3019935          DOI: 10.1128/JB.01180-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  17 in total

1.  The Staden package, 1998.

Authors:  R Staden; K F Beal; J K Bonfield
Journal:  Methods Mol Biol       Date:  2000

Review 2.  Getting better with bifidobacteria.

Authors:  S C Leahy; D G Higgins; G F Fitzgerald; D van Sinderen
Journal:  J Appl Microbiol       Date:  2005       Impact factor: 3.772

Review 3.  Genome-scale analyses of health-promoting bacteria: probiogenomics.

Authors:  Marco Ventura; Sarah O'Flaherty; Marcus J Claesson; Francesca Turroni; Todd R Klaenhammer; Douwe van Sinderen; Paul W O'Toole
Journal:  Nat Rev Microbiol       Date:  2008-11-24       Impact factor: 60.633

4.  Frameshift detection in prokaryotic genomic sequences.

Authors:  Andrey Kislyuk; Alexandre Lomsadze; Alla L Lapidus; Mark Borodovsky
Journal:  Int J Bioinform Res Appl       Date:  2009

5.  Selection of bifidobacteria based on adhesion and anti-inflammatory capacity in vitro for amelioration of murine colitis.

Authors:  Julia Preising; David Philippe; Marita Gleinser; Hua Wei; Stephanie Blum; Bernhard J Eikmanns; Jan-Hendrik Niess; Christian U Riedel
Journal:  Appl Environ Microbiol       Date:  2010-03-12       Impact factor: 4.792

6.  Anti-inflammatory effects of bifidobacteria by inhibition of LPS-induced NF-kappaB activation.

Authors:  Christian-U Riedel; Francis Foata; David Philippe; Oskar Adolfsson; Bernhard-J Eikmanns; Stephanie Blum
Journal:  World J Gastroenterol       Date:  2006-06-21       Impact factor: 5.742

Review 7.  Genomic insights into bifidobacteria.

Authors:  Ju-Hoon Lee; Daniel J O'Sullivan
Journal:  Microbiol Mol Biol Rev       Date:  2010-09       Impact factor: 11.056

8.  The Pfam protein families database.

Authors:  Robert D Finn; Jaina Mistry; John Tate; Penny Coggill; Andreas Heger; Joanne E Pollington; O Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

9.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

10.  InterPro: the integrative protein signature database.

Authors:  Sarah Hunter; Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Ujjwal Das; Louise Daugherty; Lauranne Duquenne; Robert D Finn; Julian Gough; Daniel Haft; Nicolas Hulo; Daniel Kahn; Elizabeth Kelly; Aurélie Laugraud; Ivica Letunic; David Lonsdale; Rodrigo Lopez; Martin Madera; John Maslen; Craig McAnulla; Jennifer McDowall; Jaina Mistry; Alex Mitchell; Nicola Mulder; Darren Natale; Christine Orengo; Antony F Quinn; Jeremy D Selengut; Christian J A Sigrist; Manjula Thimma; Paul D Thomas; Franck Valentin; Derek Wilson; Cathy H Wu; Corin Yeats
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

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  18 in total

Review 1.  Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.

Authors:  Beile Gao; Radhey S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

2.  Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria.

Authors:  Sadaki Asakuma; Emi Hatakeyama; Tadasu Urashima; Erina Yoshida; Takane Katayama; Kenji Yamamoto; Hidehiko Kumagai; Hisashi Ashida; Junko Hirose; Motomitsu Kitaoka
Journal:  J Biol Chem       Date:  2011-08-09       Impact factor: 5.157

3.  Quantification of human fecal bifidobacterium species by use of quantitative real-time PCR analysis targeting the groEL gene.

Authors:  Jana Junick; Michael Blaut
Journal:  Appl Environ Microbiol       Date:  2012-02-03       Impact factor: 4.792

4.  Tough nuts to crack: site-directed mutagenesis of bifidobacteria remains a challenge.

Authors:  Vincenzo F Brancaccio; Daria S Zhurina; Christian U Riedel
Journal:  Bioengineered       Date:  2013-01-11       Impact factor: 3.269

5.  Unraveling the Leloir pathway of Bifidobacterium bifidum: significance of the uridylyltransferases.

Authors:  Frederik De Bruyn; Joeri Beauprez; Jo Maertens; Wim Soetaert; Marjan De Mey
Journal:  Appl Environ Microbiol       Date:  2013-09-06       Impact factor: 4.792

6.  Expression of fluorescent proteins in bifidobacteria for analysis of host-microbe interactions.

Authors:  Verena Grimm; Marita Gleinser; Caroline Neu; Daria Zhurina; Christian U Riedel
Journal:  Appl Environ Microbiol       Date:  2014-02-28       Impact factor: 4.792

7.  Experimental determination and characterization of the gap promoter of Bifidobacterium bifidum S17.

Authors:  Zhongke Sun; Christina Westermann; Jing Yuan; Christian U Riedel
Journal:  Bioengineered       Date:  2014-10-30       Impact factor: 3.269

8.  Structure of a Core Promoter in Bifidobacterium longum NCC2705.

Authors:  Tomoya Kozakai; Ayako Izumi; Ayako Horigome; Toshitaka Odamaki; Jin-Zhong Xiao; Izumi Nomura; Tohru Suzuki
Journal:  J Bacteriol       Date:  2020-03-11       Impact factor: 3.490

9.  Analysis of predicted carbohydrate transport systems encoded by Bifidobacterium bifidum PRL2010.

Authors:  Francesca Turroni; Francesco Strati; Elena Foroni; Fausta Serafini; Sabrina Duranti; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2012-05-04       Impact factor: 4.792

Review 10.  Bifidobacterial enzymes involved in the metabolism of human milk oligosaccharides.

Authors:  Motomitsu Kitaoka
Journal:  Adv Nutr       Date:  2012-05-01       Impact factor: 8.701

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