Literature DB >> 21036996

Complete genome sequence of a carbon monoxide-utilizing acetogen, Eubacterium limosum KIST612.

Hanseong Roh1, Hyeok-Jin Ko, Daehee Kim, Dong Geon Choi, Shinyoung Park, Sujin Kim, In Seop Chang, In-Geol Choi.   

Abstract

Eubacterium limosum KIST612 is an anaerobic acetogenic bacterium that uses CO as the sole carbon/energy source and produces acetate, butyrate, and ethanol. To evaluate its potential as a syngas microbial catalyst, we have sequenced the complete 4.3-Mb genome of E. limosum KIST612.

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Year:  2010        PMID： 21036996      PMCID： PMC3019962          DOI： 10.1128/JB.01217-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 5.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

Review 6.  Microbiology of synthesis gas fermentation for biofuel production.

Authors:  Anne M Henstra; Jan Sipma; Arjen Rinzema; Alfons J M Stams
Journal:  Curr Opin Biotechnol       Date:  2007-03-30       Impact factor: 9.740

7.  The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).

Authors:  Elizabeth Pierce; Gary Xie; Ravi D Barabote; Elizabeth Saunders; Cliff S Han; John C Detter; Paul Richardson; Thomas S Brettin; Amaresh Das; Lars G Ljungdahl; Stephen W Ragsdale
Journal:  Environ Microbiol       Date:  2008-06-09       Impact factor: 5.491

8.  Use of an industrial grade medium and medium enhancing effects on high cell density CO fermentation by Eubacterium limosum KIST612.

Authors:  In Seop Chang; Daehee Kim; Byung Hong Kim; Robert W Lovitt
Journal:  Biotechnol Lett       Date:  2007-05-15       Impact factor: 2.461

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  21 in total

1.  MtpB, a member of the MttB superfamily from the human intestinal acetogen Eubacterium limosum, catalyzes proline betaine demethylation.

Authors:  Jonathan W Picking; Edward J Behrman; Liwen Zhang; Joseph A Krzycki
Journal:  J Biol Chem       Date:  2019-07-24       Impact factor: 5.157

2.  Energy Conservation Model Based on Genomic and Experimental Analyses of a Carbon Monoxide-Utilizing, Butyrate-Forming Acetogen, Eubacterium limosum KIST612.

Authors:  Jiyeong Jeong; Johannes Bertsch; Verena Hess; Sunju Choi; In-Geol Choi; In Seop Chang; Volker Müller
Journal:  Appl Environ Microbiol       Date:  2015-05-08       Impact factor: 4.792

3.  Expanding the genetic engineering toolbox for the metabolically flexible acetogen Eubacterium limosum.

Authors:  Patrick A Sanford; Benjamin M Woolston
Journal:  J Ind Microbiol Biotechnol       Date:  2022-10-13       Impact factor: 4.258

4.  Anaerobic biosynthesis of the lower ligand of vitamin B12.

Authors:  Amrita B Hazra; Andrew W Han; Angad P Mehta; Kenny C Mok; Vadim Osadchiy; Tadhg P Begley; Michiko E Taga
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-05       Impact factor: 11.205

5.  Clostridium difficile is an autotrophic bacterial pathogen.

Authors:  Michael Köpke; Melanie Straub; Peter Dürre
Journal:  PLoS One       Date:  2013-04-23       Impact factor: 3.240

6.  First insights into the syntrophic acetate-oxidizing bacteria--a genetic study.

Authors:  Bettina Müller; Li Sun; Anna Schnürer
Journal:  Microbiologyopen       Date:  2012-12-13       Impact factor: 3.139

7.  Draft Genome Sequence of Chemolithoautotrophic Acetogenic Butanol-Producing Eubacterium limosum ATCC 8486.

Authors:  Yoseb Song; Byung-Kwan Cho
Journal:  Genome Announc       Date:  2015-02-12

8.  The complete genome sequence of Eubacterium limosum SA11, a metabolically versatile rumen acetogen.

Authors:  William J Kelly; Gemma Henderson; Diana M Pacheco; Dong Li; Kerri Reilly; Graham E Naylor; Peter H Janssen; Graeme T Attwood; Eric Altermann; Sinead C Leahy
Journal:  Stand Genomic Sci       Date:  2016-03-15

Review 9.  Gas Fermentation-A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks.

Authors:  FungMin Liew; Michael E Martin; Ryan C Tappel; Björn D Heijstra; Christophe Mihalcea; Michael Köpke
Journal:  Front Microbiol       Date:  2016-05-11       Impact factor: 5.640

10.  Cystic fibrosis transmembrane conductance regulator (CFTR) allelic variants relate to shifts in faecal microbiota of cystic fibrosis patients.

Authors:  Serena Schippa; Valerio Iebba; Floriana Santangelo; Antonella Gagliardi; Riccardo Valerio De Biase; Antonella Stamato; Serenella Bertasi; Marco Lucarelli; Maria Pia Conte; Serena Quattrucci
Journal:  PLoS One       Date:  2013-04-17       Impact factor: 3.240
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