Literature DB >> 2101688

Nucleotide sequence of Citrus limon 26S rRNA gene and secondary structure model of its RNA.

V O Kolosha1, I Fodor.   

Abstract

The complete nucleotide sequence of Citrus limon 26S rDNA has been determined. The sequence has been aligned with large ribosomal RNA (L-rRNA) sequences of Escherichia coli, Saccharomyces cerevisiae and Oryza sativa. Nine extensive expansion segments in dicot 26S rRNA relative to E. coli 23S rRNA have been identified and compared with analogous segments of monocot, yeast, amphibian and human L-rRNAs. A secondary structure model for lemon 26S rRNA has been derived based on the refined model of E. coli 23S rRNA. It has been compared with other eukaryotic L-rRNAs models in terms of location of functionally important regions. Origin and evolution of L-rRNA expansion segments are discussed.

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Year:  1990        PMID: 2101688     DOI: 10.1007/bf00018556

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  39 in total

1.  Structural and transcriptional characterization of the external spacer of a ribosomal RNA nuclear gene from a higher plant.

Authors:  D Delcasso-Tremousaygue; F Grellet; F Panabieres; E D Ananiev; M Delseny
Journal:  Eur J Biochem       Date:  1988-03-15

2.  The rDNA of C. elegans: sequence and structure.

Authors:  R E Ellis; J E Sulston; A R Coulson
Journal:  Nucleic Acids Res       Date:  1986-03-11       Impact factor: 16.971

3.  Xenopus laevis 28S ribosomal RNA: a secondary structure model and its evolutionary and functional implications.

Authors:  C G Clark; B W Tague; V C Ware; S A Gerbi
Journal:  Nucleic Acids Res       Date:  1984-08-10       Impact factor: 16.971

4.  Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli.

Authors:  J Brosius; T J Dull; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1980-01       Impact factor: 11.205

5.  Improved methods for structure probing in large RNAs: a rapid 'heterologous' sequencing approach is coupled to the direct mapping of nuclease accessible sites. Application to the 5' terminal domain of eukaryotic 28S rRNA.

Authors:  H L Qu; B Michot; J P Bachellerie
Journal:  Nucleic Acids Res       Date:  1983-09-10       Impact factor: 16.971

6.  The secondary structure of the protein L1 binding region of ribosomal 23S RNA. Homologies with putative secondary structures of the L11 mRNA and of a region of mitochondrial 16S rRNA.

Authors:  C Branlant; A Krol; A Machatt; J P Ebel
Journal:  Nucleic Acids Res       Date:  1981-01-24       Impact factor: 16.971

7.  The structure of the yeast ribosomal RNA genes. 4. Complete sequence of the 25 S rRNA gene from Saccharomyces cerevisae.

Authors:  O I Georgiev; N Nikolaev; A A Hadjiolov; K G Skryabin; V M Zakharyev; A A Bayev
Journal:  Nucleic Acids Res       Date:  1981-12-21       Impact factor: 16.971

8.  The structure of rat 28S ribosomal ribonucleic acid inferred from the sequence of nucleotides in a gene.

Authors:  Y L Chan; J Olvera; I G Wool
Journal:  Nucleic Acids Res       Date:  1983-11-25       Impact factor: 16.971

9.  Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis.

Authors:  V C Ware; B W Tague; C G Clark; R L Gourse; R C Brand; S A Gerbi
Journal:  Nucleic Acids Res       Date:  1983-11-25       Impact factor: 16.971

10.  Yeast ribosomal protein L25 binds to an evolutionary conserved site on yeast 26S and E. coli 23S rRNA.

Authors:  T T el-Baradi; H A Raué; V C de Regt; E C Verbree; R J Planta
Journal:  EMBO J       Date:  1985-08       Impact factor: 11.598

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  5 in total

1.  A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures.

Authors:  R R Gutell; M N Schnare; M W Gray
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

2.  A compilation of large subunit (23S-like) ribosomal RNA sequences presented in a secondary structure format.

Authors:  R R Gutell; M N Schnare; M W Gray
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

3.  Intra-individual heterogeneity of rDNA allows the distinction between two closely related species in the Genus Helianthus.

Authors:  T Cuéllar; J L Bella; E Beihassen
Journal:  Theor Appl Genet       Date:  1996-10       Impact factor: 5.699

4.  Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing.

Authors:  Shannon C K Straub; Mark Fishbein; Tatyana Livshultz; Zachary Foster; Matthew Parks; Kevin Weitemier; Richard C Cronn; Aaron Liston
Journal:  BMC Genomics       Date:  2011-05-04       Impact factor: 3.969

5.  Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae).

Authors:  Kevin Weitemier; Shannon C K Straub; Mark Fishbein; Aaron Liston
Journal:  PeerJ       Date:  2015-01-06       Impact factor: 2.984

  5 in total

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