Literature DB >> 20979102

The phage-host arms race: shaping the evolution of microbes.

Adi Stern1, Rotem Sorek.   

Abstract

Bacteria, the most abundant organisms on the planet, are outnumbered by a factor of 10 to 1 by phages that infect them. Faced with the rapid evolution and turnover of phage particles, bacteria have evolved various mechanisms to evade phage infection and killing, leading to an evolutionary arms race. The extensive co-evolution of both phage and host has resulted in considerable diversity on the part of both bacterial and phage defensive and offensive strategies. Here, we discuss the unique and common features of phage resistance mechanisms and their role in global biodiversity. The commonalities between defense mechanisms suggest avenues for the discovery of novel forms of these mechanisms based on their evolutionary traits.

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Year:  2011        PMID: 20979102      PMCID: PMC3274958          DOI: 10.1002/bies.201000071

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  109 in total

1.  Identification of genes that are associated with DNA repeats in prokaryotes.

Authors:  Ruud Jansen; Jan D A van Embden; Wim Gaastra; Leo M Schouls
Journal:  Mol Microbiol       Date:  2002-03       Impact factor: 3.501

Review 2.  Bacteriophage resistance mechanisms.

Authors:  Simon J Labrie; Julie E Samson; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2010-03-29       Impact factor: 60.633

3.  Integration of horizontally transferred genes into regulatory interaction networks takes many million years.

Authors:  Martin J Lercher; Csaba Pál
Journal:  Mol Biol Evol       Date:  2007-12-24       Impact factor: 16.240

Review 4.  CRISPR-based adaptive and heritable immunity in prokaryotes.

Authors:  John van der Oost; Matthijs M Jore; Edze R Westra; Magnus Lundgren; Stan J J Brouns
Journal:  Trends Biochem Sci       Date:  2009-07-29       Impact factor: 13.807

5.  High abundance of viruses found in aquatic environments.

Authors:  O Bergh; K Y Børsheim; G Bratbak; M Heldal
Journal:  Nature       Date:  1989-08-10       Impact factor: 49.962

6.  Simple sequence repeats in the Helicobacter pylori genome.

Authors:  N J Saunders; J F Peden; D W Hood; E R Moxon
Journal:  Mol Microbiol       Date:  1998-03       Impact factor: 3.501

7.  Selfish behavior of restriction-modification systems.

Authors:  T Naito; K Kusano; I Kobayashi
Journal:  Science       Date:  1995-02-10       Impact factor: 47.728

8.  Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA.

Authors:  Susanne K Christensen; Kim Pedersen; Flemming G Hansen; Kenn Gerdes
Journal:  J Mol Biol       Date:  2003-09-26       Impact factor: 5.469

9.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

10.  Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes.

Authors:  Deo Prakash Pandey; Kenn Gerdes
Journal:  Nucleic Acids Res       Date:  2005-02-17       Impact factor: 16.971

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  180 in total

1.  The Need for Speed: Run-On Oligomer Filament Formation Provides Maximum Speed with Maximum Sequestration of Activity.

Authors:  Claudia J Barahona; L Emilia Basantes; Kassidy J Tompkins; Desirae M Heitman; Barbara I Chukwu; Juan Sanchez; Jonathan L Sanchez; Niloofar Ghadirian; Chad K Park; N C Horton
Journal:  J Virol       Date:  2019-02-19       Impact factor: 5.103

Review 2.  RNA-guided genetic silencing systems in bacteria and archaea.

Authors:  Blake Wiedenheft; Samuel H Sternberg; Jennifer A Doudna
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

3.  A vast collection of microbial genes that are toxic to bacteria.

Authors:  Aya Kimelman; Asaf Levy; Hila Sberro; Shahar Kidron; Azita Leavitt; Gil Amitai; Deborah R Yoder-Himes; Omri Wurtzel; Yiwen Zhu; Edward M Rubin; Rotem Sorek
Journal:  Genome Res       Date:  2012-02-01       Impact factor: 9.043

Review 4.  A new perspective on lysogeny: prophages as active regulatory switches of bacteria.

Authors:  Ron Feiner; Tal Argov; Lev Rabinovich; Nadejda Sigal; Ilya Borovok; Anat A Herskovits
Journal:  Nat Rev Microbiol       Date:  2015-10       Impact factor: 60.633

5.  The Interfaces of Genetic Conflict Are Hot Spots for Innovation.

Authors:  Joshua Carter; Connor Hoffman; Blake Wiedenheft
Journal:  Cell       Date:  2017-01-12       Impact factor: 41.582

6.  Critical Anti-CRISPR Locus Repression by a Bi-functional Cas9 Inhibitor.

Authors:  Beatriz A Osuna; Shweta Karambelkar; Caroline Mahendra; Anne Sarbach; Matthew C Johnson; Samuel Kilcher; Joseph Bondy-Denomy
Journal:  Cell Host Microbe       Date:  2020-04-22       Impact factor: 21.023

7.  Evolutionary dynamics of the prokaryotic adaptive immunity system CRISPR-Cas in an explicit ecological context.

Authors:  Jaime Iranzo; Alexander E Lobkovsky; Yuri I Wolf; Eugene V Koonin
Journal:  J Bacteriol       Date:  2013-06-21       Impact factor: 3.490

Review 8.  Revenge of the phages: defeating bacterial defences.

Authors:  Julie E Samson; Alfonso H Magadán; Mourad Sabri; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2013-08-27       Impact factor: 60.633

Review 9.  CRISPR-based technologies: prokaryotic defense weapons repurposed.

Authors:  Rebecca M Terns; Michael P Terns
Journal:  Trends Genet       Date:  2014-02-18       Impact factor: 11.639

10.  Genomic analysis of cold-active Colwelliaphage 9A and psychrophilic phage-host interactions.

Authors:  Jesse R Colangelo-Lillis; Jody W Deming
Journal:  Extremophiles       Date:  2012-12-07       Impact factor: 2.395

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