Literature DB >> 20977658

Insights into the bamboo genome: syntenic relationships to rice and sorghum.

Yi-Jie Gui1, Yan Zhou, Yu Wang, Sheng Wang, Sheng-Yue Wang, Yan Hu, Shi-Ping Bo, Huan Chen, Chang-Ping Zhou, Nai-Xun Ma, Tian-Zhen Zhang, Long-Jiang Fan.   

Abstract

Bamboo occupies an important phylogenetic node in the grass family and plays a significant role in the forest industry. We produced 1.2 Mb of tetraploid moso bamboo (Phyllostachys pubescens E. Mazel ex H. de Leh.) sequences from 13 bacterial artificial chromosome (BAC) clones, and these are the largest genomic sequences available so far from the subfamily Bambusoideae. The content of repetitive elements (36.2%) in bamboo is similar to that in rice. Both rice and sorghum exhibit high genomic synteny with bamboo, which suggests that rice and sorghum may be useful as models for decoding Bambusoideae genomes.
© 2010 Institute of Botany, Chinese Academy of Sciences.

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Year:  2010        PMID: 20977658     DOI: 10.1111/j.1744-7909.2010.00965.x

Source DB:  PubMed          Journal:  J Integr Plant Biol        ISSN: 1672-9072            Impact factor:   7.061


  11 in total

1.  The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla).

Authors:  Zhenhua Peng; Ying Lu; Lubin Li; Qiang Zhao; Qi Feng; Zhimin Gao; Hengyun Lu; Tao Hu; Na Yao; Kunyan Liu; Yan Li; Danlin Fan; Yunli Guo; Wenjun Li; Yiqi Lu; Qijun Weng; CongCong Zhou; Lei Zhang; Tao Huang; Yan Zhao; Chuanrang Zhu; Xinge Liu; Xuewen Yang; Tao Wang; Kun Miao; Caiyun Zhuang; Xiaolu Cao; Wenli Tang; Guanshui Liu; Yingli Liu; Jie Chen; Zhenjing Liu; Licai Yuan; Zhenhua Liu; Xuehui Huang; Tingting Lu; Benhua Fei; Zemin Ning; Bin Han; Zehui Jiang
Journal:  Nat Genet       Date:  2013-02-24       Impact factor: 38.330

2.  The roles of Aux/IAA gene family in development of Dendrocalamus sinicus (Poaceae: Bambusoideae) inferred by comprehensive analysis and expression profiling.

Authors:  Lingna Chen; Xianggan Zheng; Xiaojuan Guo; Yongzhong Cui; Hanqi Yang
Journal:  Mol Biol Rep       Date:  2019-01-28       Impact factor: 2.316

3.  Transcriptome sequencing and de novo analysis for Ma bamboo (Dendrocalamus latiflorus Munro) using the Illumina platform.

Authors:  Mingying Liu; Guirong Qiao; Jing Jiang; Huiqin Yang; Lihua Xie; Jinzhong Xie; Renying Zhuo
Journal:  PLoS One       Date:  2012-10-03       Impact factor: 3.240

4.  BambooGDB: a bamboo genome database with functional annotation and an analysis platform.

Authors:  Hansheng Zhao; Zhenhua Peng; Benhua Fei; Lubin Li; Tao Hu; Zhimin Gao; Zehui Jiang
Journal:  Database (Oxford)       Date:  2014-03-05       Impact factor: 3.451

5.  Bamboo: an overview on its genetic diversity and characterization.

Authors:  Lucina Yeasmin; Md Nasim Ali; Saikat Gantait; Somsubhra Chakraborty
Journal:  3 Biotech       Date:  2014-03-01       Impact factor: 2.406

6.  Transcriptome Sequencing and Analysis for Culm Elongation of the World's Largest Bamboo (Dendrocalamus sinicus).

Authors:  Kai Cui; Haiying Wang; Shengxi Liao; Qi Tang; Li Li; Yongzhong Cui; Yuan He
Journal:  PLoS One       Date:  2016-06-15       Impact factor: 3.240

7.  Genome-Wide Identification and Characterization of the UBP Gene Family in Moso Bamboo (Phyllostachys edulis).

Authors:  Ruihua Wu; Yanrong Shi; Qian Zhang; Wenqing Zheng; Shaoliang Chen; Liang Du; Cunfu Lu
Journal:  Int J Mol Sci       Date:  2019-09-03       Impact factor: 5.923

8.  Draft genome of the herbaceous bamboo Raddia distichophylla.

Authors:  Wei Li; Cong Shi; Kui Li; Qun-Jie Zhang; Yan Tong; Yun Zhang; Jun Wang; Lynn Clark; Li-Zhi Gao
Journal:  G3 (Bethesda)       Date:  2021-02-09       Impact factor: 3.154

9.  Transcriptome sequencing and analysis of the fast growing shoots of moso bamboo (Phyllostachys edulis).

Authors:  Zhenhua Peng; Chunling Zhang; Ying Zhang; Tao Hu; Shaohua Mu; Xueping Li; Jian Gao
Journal:  PLoS One       Date:  2013-11-07       Impact factor: 3.240

10.  TCP Transcription Factors in Moso Bamboo (Phyllostachys edulis): Genome-Wide Identification and Expression Analysis.

Authors:  Huan-Long Liu; Min Wu; Fei Li; Ya-Meng Gao; Feng Chen; Yan Xiang
Journal:  Front Plant Sci       Date:  2018-10-05       Impact factor: 5.753

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