Literature DB >> 20972883

Resting developments: a review of fMRI post-processing methodologies for spontaneous brain activity.

Daniel S Margulies1, Joachim Böttger, Xiangyu Long, Yating Lv, Clare Kelly, Alexander Schäfer, Dirk Goldhahn, Alexander Abbushi, Michael P Milham, Gabriele Lohmann, Arno Villringer.   

Abstract

Analytic tools for addressing spontaneous brain activity, as acquired with fMRI during the "resting-state," have grown dramatically over the past decade. Along with each new technique, novel hypotheses about the functional organization of the brain are also available to researchers. We review six prominent categories of resting-state fMRI data analysis: seed-based functional connectivity, independent component analysis, clustering, pattern classification, graph theory, and two "local" methods. In surveying these methods, we address their underlying assumptions, methodologies, and novel applications.

Mesh:

Year:  2010        PMID: 20972883     DOI: 10.1007/s10334-010-0228-5

Source DB:  PubMed          Journal:  MAGMA        ISSN: 0968-5243            Impact factor:   2.310


  189 in total

1.  CORSICA: correction of structured noise in fMRI by automatic identification of ICA components.

Authors:  Vincent Perlbarg; Pierre Bellec; Jean-Luc Anton; Mélanie Pélégrini-Issac; Julien Doyon; Habib Benali
Journal:  Magn Reson Imaging       Date:  2006-11-30       Impact factor: 2.546

Review 2.  Unrest at rest: default activity and spontaneous network correlations.

Authors:  Randy L Buckner; Justin L Vincent
Journal:  Neuroimage       Date:  2007-01-25       Impact factor: 6.556

3.  Multi-level bootstrap analysis of stable clusters in resting-state fMRI.

Authors:  Pierre Bellec; Pedro Rosa-Neto; Oliver C Lyttelton; Habib Benali; Alan C Evans
Journal:  Neuroimage       Date:  2010-03-10       Impact factor: 6.556

4.  Disrupted amygdalar subregion functional connectivity and evidence of a compensatory network in generalized anxiety disorder.

Authors:  Amit Etkin; Katherine E Prater; Alan F Schatzberg; Vinod Menon; Michael D Greicius
Journal:  Arch Gen Psychiatry       Date:  2009-12

5.  Changes in the interaction of resting-state neural networks from adolescence to adulthood.

Authors:  Michael C Stevens; Godfrey D Pearlson; Vince D Calhoun
Journal:  Hum Brain Mapp       Date:  2009-08       Impact factor: 5.038

6.  Resting-state networks in the infant brain.

Authors:  Peter Fransson; Beatrice Skiöld; Sandra Horsch; Anders Nordell; Mats Blennow; Hugo Lagercrantz; Ulrika Aden
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

7.  Resting-state functional connectivity of the rat brain.

Authors:  Christopher P Pawela; Bharat B Biswal; Younghoon R Cho; Dennis S Kao; Rupeng Li; Seth R Jones; Marie L Schulte; Hani S Matloub; Anthony G Hudetz; James S Hyde
Journal:  Magn Reson Med       Date:  2008-05       Impact factor: 4.668

8.  Functional segmentation of the brain cortex using high model order group PICA.

Authors:  Vesa Kiviniemi; Tuomo Starck; Jukka Remes; Xiangyu Long; Juha Nikkinen; Marianne Haapea; Juha Veijola; Irma Moilanen; Matti Isohanni; Yu-Feng Zang; Osmo Tervonen
Journal:  Hum Brain Mapp       Date:  2009-12       Impact factor: 5.038

9.  Connectivity-based parcellation of human cortex using diffusion MRI: Establishing reproducibility, validity and observer independence in BA 44/45 and SMA/pre-SMA.

Authors:  Johannes C Klein; Timothy E J Behrens; Matthew D Robson; Clare E Mackay; Desmond J Higham; Heidi Johansen-Berg
Journal:  Neuroimage       Date:  2006-10-03       Impact factor: 6.556

10.  Modulation of brain resting-state networks by sad mood induction.

Authors:  Ben J Harrison; Jesus Pujol; Hector Ortiz; Alex Fornito; Christos Pantelis; Murat Yücel
Journal:  PLoS One       Date:  2008-03-19       Impact factor: 3.240

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  104 in total

Review 1.  Large-scale brain systems in ADHD: beyond the prefrontal-striatal model.

Authors:  F Xavier Castellanos; Erika Proal
Journal:  Trends Cogn Sci       Date:  2011-12-12       Impact factor: 20.229

2.  A clustering-based method to detect functional connectivity differences.

Authors:  Gang Chen; B Douglas Ward; Chunming Xie; Wenjun Li; Guangyu Chen; Joseph S Goveas; Piero G Antuono; Shi-Jiang Li
Journal:  Neuroimage       Date:  2012-03-03       Impact factor: 6.556

3.  Two-axis acceleration of functional connectivity magnetic resonance imaging by parallel excitation of phase-tagged slices and half k-space acceleration.

Authors:  Andrzej Jesmanowicz; Andrew S Nencka; Shi-Jiang Li; James S Hyde
Journal:  Brain Connect       Date:  2011

4.  In vivo MR imaging of brain networks: illusion or revolution?

Authors:  Ewald Moser; Jean-Philippe Ranjeva
Journal:  MAGMA       Date:  2010-12       Impact factor: 2.310

5.  Longitudinal Changes in Cerebellar and Thalamic Spontaneous Neuronal Activity After Wide-Awake Surgery of Brain Tumors: a Resting-State fMRI Study.

Authors:  Anthony Boyer; Jérémy Deverdun; Hugues Duffau; Emmanuelle Le Bars; François Molino; Nicolas Menjot de Champfleur; François Bonnetblanc
Journal:  Cerebellum       Date:  2016-08       Impact factor: 3.847

6.  Functional magnetic resonance imaging phase synchronization as a measure of dynamic functional connectivity.

Authors:  Enrico Glerean; Juha Salmi; Juha M Lahnakoski; Iiro P Jääskeläinen; Mikko Sams
Journal:  Brain Connect       Date:  2012-06-11

7.  A multivariate distance-based analytic framework for connectome-wide association studies.

Authors:  Zarrar Shehzad; Clare Kelly; Philip T Reiss; R Cameron Craddock; John W Emerson; Katie McMahon; David A Copland; F Xavier Castellanos; Michael P Milham
Journal:  Neuroimage       Date:  2014-02-28       Impact factor: 6.556

8.  Task-modulated coactivation of vergence neural substrates.

Authors:  Rajbir Jaswal; Suril Gohel; Bharat B Biswal; Tara L Alvarez
Journal:  Brain Connect       Date:  2014-06-19

9.  A resting-state functional MRI study on central control of storage: brain response provoked by strong desire to void.

Authors:  Yi Gao; Limin Liao; Bertil F M Blok
Journal:  Int Urol Nephrol       Date:  2015-04-28       Impact factor: 2.370

10.  Cerebral gray matter volumes and low-frequency fluctuation of BOLD signals in cocaine dependence: duration of use and gender difference.

Authors:  Jaime S Ide; Sheng Zhang; Sien Hu; Rajita Sinha; Carolyn M Mazure; Chiang-Shan R Li
Journal:  Drug Alcohol Depend       Date:  2013-09-17       Impact factor: 4.492

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