Literature DB >> 20961822

Comparative genomics in teleost species: Knowledge transfer by linking the genomes of model and non-model fish species.

Elena Sarropoulou1, Jorge M O Fernandes.   

Abstract

Comparative genomics is a powerful tool to transfer knowledge coming from model fish species to non-model fish species of economic or/and evolutionary interest. Such transfer is of importance as functional studies either are difficult to perform with most non-model species. The first comparative map constructed using the human and the chimpanzee genome allowed the identification of putative orthologues. Although comparative mapping in teleosts is still in its infancy, five model teleost genomes from different orders have been fully sequenced to date and the sequencing of several commercially important species are also underway or near completion. The accessibility of these whole genome sequences and rapid developments in genomics of fish species are paving the way towards new and valuable research in comparative genetics and genomics. With the accumulation of information in model species, the genetic and genomic characterization of non-model, but economically, physiologically or evolutionary important species is now feasible. Furthermore, comparison of low coverage gene maps of non-model fish species against fully sequenced fish species will enhance the efficiency of candidate gene identification projected for quantitative trait loci (QTL) scans for traits of special interest. Copyright Â
© 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20961822     DOI: 10.1016/j.cbd.2010.09.003

Source DB:  PubMed          Journal:  Comp Biochem Physiol Part D Genomics Proteomics        ISSN: 1744-117X            Impact factor:   2.674


  16 in total

1.  Identification, Phylogeny, and Function of fabp2 Paralogs in Two Non-Model Teleost Fish Species.

Authors:  Elisavet Kaitetzidou; Stavros Chatzifotis; Efthimia Antonopoulou; Elena Sarropoulou
Journal:  Mar Biotechnol (NY)       Date:  2015-08-14       Impact factor: 3.619

2.  Comparative mapping for bighead carp (Aristichthys nobilis) against model and non-model fishes provides insights into the genomic evolution of cyprinids.

Authors:  Chuankun Zhu; Jingou Tong; Xiaomu Yu; Wenjie Guo
Journal:  Mol Genet Genomics       Date:  2015-01-28       Impact factor: 3.291

3.  A microsatellite linkage map of striped bass (Morone saxatilis) reveals conserved synteny with the three-spined stickleback (Gasterosteus aculeatus).

Authors:  Sixin Liu; Caird E Rexroad; Charlene R Couch; Jan F Cordes; Kimberly S Reece; Craig V Sullivan
Journal:  Mar Biotechnol (NY)       Date:  2011-10-04       Impact factor: 3.619

4.  Fish as Model Systems to Study Epigenetic Drivers in Human Self-Domestication and Neurodevelopmental Cognitive Disorders.

Authors:  Dafni Anastasiadi; Francesc Piferrer; Maren Wellenreuther; Antonio Benítez Burraco
Journal:  Genes (Basel)       Date:  2022-05-31       Impact factor: 4.141

5.  First haploid genetic map based on microsatellite markers in Senegalese sole (Solea senegalensis, Kaup 1858).

Authors:  Ma Jesús Molina-Luzón; Miguel Hermida; Rafael Navajas-Pérez; Francisca Robles; José Ignacio Navas; Carmelo Ruiz-Rejón; Carmen Bouza; Paulino Martínez; Roberto de la Herrán
Journal:  Mar Biotechnol (NY)       Date:  2014-08-09       Impact factor: 3.619

6.  Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring.

Authors:  Sangeet Lamichhaney; Alvaro Martinez Barrio; Nima Rafati; Görel Sundström; Carl-Johan Rubin; Elizabeth R Gilbert; Jonas Berglund; Anna Wetterbom; Linda Laikre; Matthew T Webster; Manfred Grabherr; Nils Ryman; Leif Andersson
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-07       Impact factor: 11.205

7.  A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts.

Authors:  René Guyomard; Mekki Boussaha; Francine Krieg; Caroline Hervet; Edwige Quillet
Journal:  BMC Genet       Date:  2012-03-16       Impact factor: 2.797

8.  A RAD-based linkage map and comparative genomics in the gudgeons (genus Gnathopogon, Cyprinidae).

Authors:  Ryo Kakioka; Tomoyuki Kokita; Hiroki Kumada; Katsutoshi Watanabe; Noboru Okuda
Journal:  BMC Genomics       Date:  2013-01-16       Impact factor: 3.969

9.  Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements.

Authors:  Yu Zhang; Shikai Liu; Jianguo Lu; Yanliang Jiang; Xiaoyu Gao; Parichart Ninwichian; Chao Li; Geoff Waldbieser; Zhanjiang Liu
Journal:  BMC Genomics       Date:  2013-06-10       Impact factor: 3.969

Review 10.  Advances in genomics of bony fish.

Authors:  Herman P Spaink; Hans J Jansen; Ron P Dirks
Journal:  Brief Funct Genomics       Date:  2013-11-29       Impact factor: 4.241

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