Literature DB >> 26272429

Identification, Phylogeny, and Function of fabp2 Paralogs in Two Non-Model Teleost Fish Species.

Elisavet Kaitetzidou1, Stavros Chatzifotis, Efthimia Antonopoulou, Elena Sarropoulou.   

Abstract

Intestinal fatty-acid-binding protein (IFABP or FABP2) is a cytosolic transporter of long-chain fatty acids, which is mainly expressed in cells of intestinal tissue. Fatty acids in teleosts are an important source of energy for growth, reproduction, and swimming and a main ingredient in the yolk sac of embryos and larvae. The fabp2 paralogs, fabp2a and fabp2b, were identified for 26 teleost fish species including the paralogs for the two non-model teleost fish species, namely the gilthead sea bream (Sparus aurata) and the European sea bass (Dicentrarchus labrax). Despite the high similarity of fabp2 paralogs, as well as the identical organization in four exons, paralogs were mapped to different chromosomes/linkage groups supporting the hypothesis that the identified transcripts are true paralogs originating from a single ancestor gene after genome duplication. This was also confirmed by phylogenetic analysis using fabp2 sequences of 26 teleosts and by synteny analysis carried out with ten teleosts. Differential expression analysis of the gilthead sea bream and European sea bass fabp2 paralogs in the intestine after fasting and refeeding experiment further revealed their altered implication in metabolism. Additional expression studies in seven developmental stages of the two species detected fabp2 paralogs relatively early in the embryonic development as well as possible complementary or separated roles of the paralogs. The identification and characterization of the two fabp2 paralogs will contribute significantly to the understanding of the fabp2 evolution as well as of the divergences in fatty acid metabolism.

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Year:  2015        PMID: 26272429     DOI: 10.1007/s10126-015-9648-6

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  52 in total

1.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

Review 2.  Cytosolic fatty acid binding proteins catalyze two distinct steps in intracellular transport of their ligands.

Authors:  Richard A Weisiger
Journal:  Mol Cell Biochem       Date:  2002-10       Impact factor: 3.396

3.  Genomic organization of Atlantic salmon (Salmo salar) fatty acid binding protein (fabp2) genes reveals independent loss of duplicate loci in teleosts.

Authors:  Yvonne Y Y Lai; Krzysztof P Lubieniecki; Ruth B Phillips; William Chow; Ben F Koop; William S Davidson
Journal:  Mar Genomics       Date:  2009-11-25       Impact factor: 1.710

4.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

Review 5.  From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).

Authors:  Axel Meyer; Yves Van de Peer
Journal:  Bioessays       Date:  2005-09       Impact factor: 4.345

6.  Intestinal fatty acid binding protein (fabp2) in Atlantic salmon (Salmo salar): Localization and alteration of expression during development of diet induced enteritis.

Authors:  Fredrik F Venold; Michael H Penn; Jim Thorsen; Jinni Gu; Trond M Kortner; Ashild Krogdahl; Anne Marie Bakke
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2012-09-20       Impact factor: 2.320

Review 7.  The emerging functions and mechanisms of mammalian fatty acid-binding proteins.

Authors:  Judith Storch; Betina Corsico
Journal:  Annu Rev Nutr       Date:  2008       Impact factor: 11.848

8.  Comparative genomics and evolutionary diversification of the duplicated fabp6a and fabp6b genes in medaka and three-spined stickleback.

Authors:  Manoj B Parmar; Ananda B Venkatachalam; Jonathan M Wright
Journal:  Comp Biochem Physiol Part D Genomics Proteomics       Date:  2012-10-10       Impact factor: 2.674

9.  European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation.

Authors:  Mbaye Tine; Heiner Kuhl; Pierre-Alexandre Gagnaire; Bruno Louro; Erick Desmarais; Rute S T Martins; Jochen Hecht; Florian Knaust; Khalid Belkhir; Sven Klages; Roland Dieterich; Kurt Stueber; Francesc Piferrer; Bruno Guinand; Nicolas Bierne; Filip A M Volckaert; Luca Bargelloni; Deborah M Power; François Bonhomme; Adelino V M Canario; Richard Reinhardt
Journal:  Nat Commun       Date:  2014-12-23       Impact factor: 14.919

10.  Liver transcriptome analysis in gilthead sea bream upon exposure to low temperature.

Authors:  Alba N Mininni; Massimo Milan; Serena Ferraresso; Tommaso Petochi; Patrizia Di Marco; Giovanna Marino; Silvia Livi; Chiara Romualdi; Luca Bargelloni; Tomaso Patarnello
Journal:  BMC Genomics       Date:  2014-09-06       Impact factor: 3.969

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