Literature DB >> 20958070

Differential reactivity between two copper sites in peptidylglycine α-hydroxylating monooxygenase.

Eduardo E Chufán1, Sean T Prigge, Xavier Siebert, Betty A Eipper, Richard E Mains, L Mario Amzel.   

Abstract

Peptidylglycine α-hydroxylating monooxygenase (PHM) catalyzes the stereospecific hydroxylation of the Cα of C-terminal glycine-extended peptides and proteins, the first step in the activation of many peptide hormones, growth factors, and neurotransmitters. The crystal structure of the enzyme revealed two nonequivalent Cu sites (Cu(M) and Cu(H)) separated by ∼11 Å. In the resting state of the enzyme, Cu(M) is coordinated in a distorted tetrahedral geometry by one methionine, two histidines, and a water molecule. The coordination site of the water molecule is the position where external ligands bind. The Cu(H) has a planar T-shaped geometry with three histidines residues and a vacant position that could potentially be occupied by a fourth ligand. Although the catalytic mechanism of PHM and the role of the metals are still being debated, Cu(M) is identified as the metal involved in catalysis, while Cu(H) is associated with electron transfer. To further probe the role of the metals, we studied how small molecules such as nitrite (NO(2)(-)), azide (N(3)(-)), and carbon monoxide (CO) interact with the PHM copper ions. The crystal structure of an oxidized nitrite-soaked PHMcc, obtained by soaking for 20 h in mother liquor supplemented with 300 mM NaNO(2), shows that nitrite anion coordinates Cu(M) in an asymmetric bidentate fashion. Surprisingly, nitrite does not bind Cu(H), despite the high concentration used in the experiments (nitrite/protein > 1000). Similarly, azide and carbon monoxide coordinate Cu(M) but not Cu(H) in the PHMcc crystal structures obtained by cocrystallization with 40 mM NaN(3) and by soaking CO under 3 atm of pressure for 30 min. This lack of reactivity at the Cu(H) is also observed in the reduced form of the enzyme: CO binds Cu(M) but not Cu(H) in the structure of PHMcc obtained by exposure of a crystal to 3 atm CO for 15 min in the presence of 5 mM ascorbic acid (reductant). The necessity of Cu(H) to maintain its redox potential in a narrow range compatible with its role as an electron-transfer site seems to explain the lack of coordination of small molecules to Cu(H); coordination of any external ligand will certainly modify its redox potential.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20958070      PMCID: PMC3025614          DOI: 10.1021/ja103117r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  50 in total

1.  Implementation of molecular replacement in AMoRe.

Authors:  J Navaza
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

2.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

Review 3.  New insights into copper monooxygenases and peptide amidation: structure, mechanism and function.

Authors:  S T Prigge; R E Mains; B A Eipper; L M Amzel
Journal:  Cell Mol Life Sci       Date:  2000-08       Impact factor: 9.261

4.  Directing the mode of nitrite binding to a copper-containing nitrite reductase from Alcaligenes faecalis S-6: characterization of an active site isoleucine.

Authors:  Martin J Boulanger; Michael E P Murphy
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

5.  Substrate-mediated electron transfer in peptidylglycine alpha-hydroxylating monooxygenase.

Authors:  S T Prigge; A S Kolhekar; B A Eipper; R E Mains; L M Amzel
Journal:  Nat Struct Biol       Date:  1999-10

6.  Isocyanide binding to the copper(I) centers of the catalytic core of peptidylglycine monooxygenase (PHMcc).

Authors:  F C Rhames; N N Murthy; K D Karlin; N J Blackburn
Journal:  J Biol Inorg Chem       Date:  2001-06       Impact factor: 3.358

7.  Does superoxide channel between the copper centers in peptidylglycine monooxygenase? A new mechanism based on carbon monoxide reactivity.

Authors:  S Jaron; N J Blackburn
Journal:  Biochemistry       Date:  1999-11-16       Impact factor: 3.162

8.  Crystal structure of a novel red copper protein from Nitrosomonas europaea.

Authors:  R L Lieberman; D M Arciero; A B Hooper; A C Rosenzweig
Journal:  Biochemistry       Date:  2001-05-15       Impact factor: 3.162

9.  Mechanism and biological role of nitric oxide binding to cytochrome c'.

Authors:  Anatoly L Mayburd; Richard J Kassner
Journal:  Biochemistry       Date:  2002-10-01       Impact factor: 3.162

10.  Essential features of the catalytic core of peptidyl-alpha-hydroxyglycine alpha-amidating lyase.

Authors:  Aparna S Kolhekar; Joseph Bell; Eric N Shiozaki; Lixian Jin; Henry T Keutmann; Tracey A Hand; Richard E Mains; Betty A Eipper
Journal:  Biochemistry       Date:  2002-10-15       Impact factor: 3.162

View more
  23 in total

1.  Nitrite Reductase Activity in Engineered Azurin Variants.

Authors:  Steven M Berry; Jacob N Strange; Erika L Bladholm; Balabhadra Khatiwada; Christine G Hedstrom; Alexandra M Sauer
Journal:  Inorg Chem       Date:  2016-04-07       Impact factor: 5.165

Review 2.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

Review 3.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

Review 4.  Catalysis and Electron Transfer in De Novo Designed Helical Scaffolds.

Authors:  Tyler B J Pinter; Karl J Koebke; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-02       Impact factor: 15.336

Review 5.  Copper-Oxygen Complexes Revisited: Structures, Spectroscopy, and Reactivity.

Authors:  Courtney E Elwell; Nicole L Gagnon; Benjamin D Neisen; Debanjan Dhar; Andrew D Spaeth; Gereon M Yee; William B Tolman
Journal:  Chem Rev       Date:  2017-01-19       Impact factor: 60.622

6.  Copper(I)-Dioxygen Adducts and Copper Enzyme Mechanisms.

Authors:  Jeffrey J Liu; Daniel E Diaz; David A Quist; Kenneth D Karlin
Journal:  Isr J Chem       Date:  2016-07-26       Impact factor: 3.333

7.  A copper-methionine interaction controls the pH-dependent activation of peptidylglycine monooxygenase.

Authors:  Andrew T Bauman; Brenda A Broers; Chelsey D Kline; Ninian J Blackburn
Journal:  Biochemistry       Date:  2011-11-22       Impact factor: 3.162

8.  Kβ Valence to Core X-ray Emission Studies of Cu(I) Binding Proteins with Mixed Methionine - Histidine Coordination. Relevance to the Reactivity of the M- and H-sites of Peptidylglycine Monooxygenase.

Authors:  Vlad Martin-Diaconescu; Kelly N Chacón; Mario Ulises Delgado-Jaime; Dimosthenis Sokaras; Tsu-Chien Weng; Serena DeBeer; Ninian J Blackburn
Journal:  Inorg Chem       Date:  2016-03-11       Impact factor: 5.165

9.  HHM motif at the CuH-site of peptidylglycine monooxygenase is a pH-dependent conformational switch.

Authors:  Chelsey D Kline; Mary Mayfield; Ninian J Blackburn
Journal:  Biochemistry       Date:  2013-04-05       Impact factor: 3.162

10.  Coordination of peroxide to the Cu(M) center of peptidylglycine α-hydroxylating monooxygenase (PHM): structural and computational study.

Authors:  Katarzyna Rudzka; Diego M Moreno; Betty Eipper; Richard Mains; Dario A Estrin; L Mario Amzel
Journal:  J Biol Inorg Chem       Date:  2012-12-18       Impact factor: 3.358

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.