Literature DB >> 20949975

Diverse effects on the native β-sheet of the human prion protein due to disease-associated mutations.

Wei Chen1, Marc W van der Kamp, Valerie Daggett.   

Abstract

Prion diseases are fatal neurodegenerative disorders that involve the conversion of the normal cellular form of the prion protein (PrP(C)) to a misfolded pathogenic form (PrP(Sc)). There are many genetic mutations of PrP associated with human prion diseases. Three of these point mutations are located at the first strand of the native β-sheet in human PrP: G131V, S132I, and A133V. To understand the underlying structural and dynamic effects of these disease-causing mutations on the human PrP, we performed molecular dynamics of wild-type and mutated human PrP. The results indicate that the mutations induced different effects but they were all related to misfolding of the native β-sheet: G131V caused the elongation of the native β-sheet, A133V disrupted the native β-sheet, and S132I converted the native β-sheet to an α-sheet. The observed changes were due to the reorientation of side chain-side chain interactions upon introducing the mutations. In addition, all mutations impaired a structurally conserved water site at the native β-sheet. Our work suggests various misfolding pathways for human PrP in response to mutation.

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Year:  2010        PMID: 20949975      PMCID: PMC2976833          DOI: 10.1021/bi101449f

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  41 in total

1.  Local structural plasticity of the prion protein. Analysis of NMR relaxation dynamics.

Authors:  J H Viles; D Donne; G Kroon; S B Prusiner; F E Cohen; H J Dyson; P E Wright
Journal:  Biochemistry       Date:  2001-03-06       Impact factor: 3.162

2.  Crystal structure of the human prion protein reveals a mechanism for oligomerization.

Authors:  K J Knaus; M Morillas; W Swietnicki; M Malone; W K Surewicz; V C Yee
Journal:  Nat Struct Biol       Date:  2001-09

3.  Structural dependencies of interresidue scalar coupling (h3)J(NC') and donor (1)H chemical shifts in the hydrogen bonding regions of proteins.

Authors:  Michael Barfield
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

4.  Impact of the tail and mutations G131V and M129V on prion protein flexibility.

Authors:  Sébastien Santini; Jean-Baptiste Claude; Stéphane Audic; Philippe Derreumaux
Journal:  Proteins       Date:  2003-05-01

5.  Influence of pH on the human prion protein: insights into the early steps of misfolding.

Authors:  Marc W van der Kamp; Valerie Daggett
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

6.  The Dynameomics rotamer library: amino acid side chain conformations and dynamics from comprehensive molecular dynamics simulations in water.

Authors:  Alexander D Scouras; Valerie Daggett
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

7.  Mapping the early steps in the pH-induced conformational conversion of the prion protein.

Authors:  D O Alonso; S J DeArmond; F E Cohen; V Daggett
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

8.  NMR solution structure of the human prion protein.

Authors:  R Zahn; A Liu; T Lührs; R Riek; C von Schroetter; F López García; M Billeter; L Calzolai; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

9.  Dynameomics: a comprehensive database of protein dynamics.

Authors:  Marc W van der Kamp; R Dustin Schaeffer; Amanda L Jonsson; Alexander D Scouras; Andrew M Simms; Rudesh D Toofanny; Noah C Benson; Peter C Anderson; Eric D Merkley; Steven Rysavy; Dennis Bromley; David A C Beck; Valerie Daggett
Journal:  Structure       Date:  2010-03-14       Impact factor: 5.006

10.  A new PRNP mutation (G131V) associated with Gerstmann-Sträussler-Scheinker disease.

Authors:  P K Panegyres; K Toufexis; B A Kakulas; L Cernevakova; P Brown; B Ghetti; P Piccardo; S R Dlouhy
Journal:  Arch Neurol       Date:  2001-11
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  12 in total

1.  Simulations of membrane-bound diglycosylated human prion protein reveal potential protective mechanisms against misfolding.

Authors:  Chin Jung Cheng; Heidi Koldsø; Marc W Van der Kamp; Birgit Schiøtt; Valerie Daggett
Journal:  J Neurochem       Date:  2017-05-22       Impact factor: 5.372

2.  Molecular dynamics simulation of temperature induced unfolding of animal prion protein.

Authors:  Xin Chen; Danhui Duan; Shuyan Zhu; Jinglai Zhang
Journal:  J Mol Model       Date:  2013-08-08       Impact factor: 1.810

3.  Types and effects of protein variations.

Authors:  Mauno Vihinen
Journal:  Hum Genet       Date:  2015-01-24       Impact factor: 4.132

4.  Structural and dynamic properties of the human prion protein.

Authors:  Wei Chen; Marc W van der Kamp; Valerie Daggett
Journal:  Biophys J       Date:  2014-03-04       Impact factor: 4.033

5.  Systematic investigation of predicted effect of nonsynonymous SNPs in human prion protein gene: a molecular modeling and molecular dynamics study.

Authors:  Samad Jahandideh; Degui Zhi
Journal:  J Biomol Struct Dyn       Date:  2013-03-25

6.  Effect of charged residues in the N-domain of Sup35 protein on prion [PSI+] stability and propagation.

Authors:  Stanislav A Bondarev; Vadim V Shchepachev; Andrey V Kajava; Galina A Zhouravleva
Journal:  J Biol Chem       Date:  2013-08-21       Impact factor: 5.157

7.  The role of Cys179-Cys214 disulfide bond in the stability and folding of prion protein: insights from molecular dynamics simulations.

Authors:  Lulu Ning; Jingjing Guo; Nengzhi Jin; Huanxiang Liu; Xiaojun Yao
Journal:  J Mol Model       Date:  2014-02-11       Impact factor: 1.810

8.  Dynamic diagnosis of familial prion diseases supports the β2-α2 loop as a universal interference target.

Authors:  Massimiliano Meli; Maria Gasset; Giorgio Colombo
Journal:  PLoS One       Date:  2011-04-28       Impact factor: 3.240

9.  Exploration of the Main Sites for the Transformation of Normal Prion Protein (PrPC) into Pathogenic Prion Protein (PrPsc).

Authors:  Xi-Lin Liu; Xiao-Li Feng; Guang-Ming Wang; Bin-Bin Gong; Waqas Ahmad; Nan-Nan Liu; Yuan-Yuan Zhang; Li Yang; Hong-Lin Ren; Shu-Sen Cui
Journal:  J Vet Res       Date:  2017-04-04       Impact factor: 1.744

10.  Molecular dynamics simulations capture the misfolding of the bovine prion protein at acidic pH.

Authors:  Chin Jung Cheng; Valerie Daggett
Journal:  Biomolecules       Date:  2014-02-10
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