Literature DB >> 20946800

Using anomalous small angle X-ray scattering to probe the ion atmosphere around nucleic acids.

Suzette A Pabit1, Kenneth D Finkelstein, Lois Pollack.   

Abstract

Anomalous small angle X-ray scattering (ASAXS) exploits contrast variation methods to highlight the scattering from one elemental component in a multielement sample, such as one ion species in an ion-DNA system. The ASAXS method has been applied to measure ions condensed around short nucleic acid duplexes. This chapter, which briefly describes the origin of the ASAXS signal, focuses on the experimental methods required to carry out these measurements and the interpretation of the anomalous signals.
Copyright © 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 20946800     DOI: 10.1016/S0076-6879(09)69019-4

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  13 in total

1.  RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations.

Authors:  Serdal Kirmizialtin; Suzette A Pabit; Steve P Meisburger; Lois Pollack; Ron Elber
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

2.  The Role of Correlation and Solvation in Ion Interactions with B-DNA.

Authors:  Maria L Sushko; Dennis G Thomas; Suzette A Pabit; Lois Pollack; Alexey V Onufriev; Nathan A Baker
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

3.  Counting ions around DNA with anomalous small-angle X-ray scattering.

Authors:  Suzette A Pabit; Steve P Meisburger; Li Li; Joshua M Blose; Christopher D Jones; Lois Pollack
Journal:  J Am Chem Soc       Date:  2010-11-03       Impact factor: 15.419

4.  Effects of a protecting osmolyte on the ion atmosphere surrounding DNA duplexes.

Authors:  Joshua M Blose; Suzette A Pabit; Steve P Meisburger; Li Li; Christopher D Jones; Lois Pollack
Journal:  Biochemistry       Date:  2011-09-15       Impact factor: 3.162

5.  Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids.

Authors:  Hung T Nguyen; Suzette A Pabit; Steve P Meisburger; Lois Pollack; David A Case
Journal:  J Chem Phys       Date:  2014-12-14       Impact factor: 3.488

6.  Extracting water and ion distributions from solution x-ray scattering experiments.

Authors:  Hung T Nguyen; Suzette A Pabit; Lois Pollack; David A Case
Journal:  J Chem Phys       Date:  2016-06-07       Impact factor: 3.488

7.  Protein-DNA and ion-DNA interactions revealed through contrast variation SAXS.

Authors:  Joshua M Tokuda; Suzette A Pabit; Lois Pollack
Journal:  Biophys Rev       Date:  2016-06

8.  Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements.

Authors:  Steve P Meisburger; Suzette A Pabit; Lois Pollack
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

Review 9.  SAXS studies of RNA: structures, dynamics, and interactions with partners.

Authors:  Yujie Chen; Lois Pollack
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-04-12       Impact factor: 9.957

10.  Multi-shell model of ion-induced nucleic acid condensation.

Authors:  Igor S Tolokh; Aleksander V Drozdetski; Lois Pollack; Nathan A Baker; Alexey V Onufriev
Journal:  J Chem Phys       Date:  2016-04-21       Impact factor: 3.488

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