Literature DB >> 20937571

Phosphoproteomics in cancer.

H C Harsha1, Akhilesh Pandey.   

Abstract

Reversible protein phosphorylation serves as a basis for regulating a number of cellular processes. Aberrant activation of kinase signaling pathways is commonly associated with several cancers. Recent developments in phosphoprotein/phosphopeptide enrichment strategies and quantitative mass spectrometry have resulted in robust pipelines for high-throughput characterization of phosphorylation in a global fashion. Today, it is possible to profile site-specific phosphorylation events on thousands of proteins in a single experiment. The potential of this approach is already being realized to characterize signaling pathways that govern oncogenesis. In addition, chemical proteomic strategies have been used to unravel targets of kinase inhibitors, which are otherwise difficult to characterize. This review summarizes various approaches used for analysis of the phosphoproteome in general, and protein kinases in particular, highlighting key cancer phosphoproteomic studies.
Copyright © 2010 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 20937571      PMCID: PMC3030978          DOI: 10.1016/j.molonc.2010.09.004

Source DB:  PubMed          Journal:  Mol Oncol        ISSN: 1574-7891            Impact factor:   6.603


  128 in total

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Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

2.  Titania as a chemo-affinity support for the column-switching HPLC analysis of phosphopeptides: application to the characterization of phosphorylation sites in proteins by combination with protease digestion and electrospray ionization mass spectrometry.

Authors:  Akira Sano; Hiroshi Nakamura
Journal:  Anal Sci       Date:  2004-05       Impact factor: 2.081

3.  Stable isotope labeling with amino acids in cell culture (SILAC) for studying dynamics of protein abundance and posttranslational modifications.

Authors:  Ramars Amanchy; Dario Eluan Kalume; Akhilesh Pandey
Journal:  Sci STKE       Date:  2005-01-18

4.  Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC).

Authors:  Ramars Amanchy; Dario E Kalume; Akiko Iwahori; Jun Zhong; Akhilesh Pandey
Journal:  J Proteome Res       Date:  2005 Sep-Oct       Impact factor: 4.466

5.  Purification of DNA complementary to nucleotide sequences required for neoplastic transformation of fibroblasts by avian sarcoma viruses.

Authors:  D Stehelin; R V Guntaka; H E Varmus; J M Bishop
Journal:  J Mol Biol       Date:  1976-03-05       Impact factor: 5.469

6.  Generation of monoclonal antibodies against phosphotyrosine and their use for affinity purification of phosphotyrosine-containing proteins.

Authors:  A R Frackelton; M Posner; B Kannan; F Mermelstein
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

7.  Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front.

Authors:  C P Paweletz; L Charboneau; V E Bichsel; N L Simone; T Chen; J W Gillespie; M R Emmert-Buck; M J Roth; E F Petricoin III; L A Liotta
Journal:  Oncogene       Date:  2001-04-12       Impact factor: 9.867

8.  Signal pathway profiling of ovarian cancer from human tissue specimens using reverse-phase protein microarrays.

Authors:  Julia D Wulfkuhle; Joy A Aquino; Valerie S Calvert; David A Fishman; George Coukos; Lance A Liotta; Emanuel F Petricoin
Journal:  Proteomics       Date:  2003-11       Impact factor: 3.984

9.  Activated epidermal growth factor receptor as a novel target in pancreatic cancer therapy.

Authors:  H C Harsha; Antonio Jimeno; Henrik Molina; Anca B Mihalas; Michael G Goggins; Ralph H Hruban; Richard D Schulick; Ullas Kamath; Anirban Maitra; Manuel Hidalgo; Akhilesh Pandey
Journal:  J Proteome Res       Date:  2008-09-27       Impact factor: 4.466

10.  Evidence that the Abelson virus protein functions in vivo as a protein kinase that phosphorylates tyrosine.

Authors:  B M Sefton; T Hunter; W C Raschke
Journal:  Proc Natl Acad Sci U S A       Date:  1981-03       Impact factor: 11.205

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  50 in total

1.  Challenges and opportunities in oncoproteomics.

Authors:  Julio E Celis; José M A Moreira
Journal:  Mol Oncol       Date:  2010-10-12       Impact factor: 6.603

Review 2.  Recent advances in enrichment and separation strategies for mass spectrometry-based phosphoproteomics.

Authors:  Chenxi Yang; Xuefei Zhong; Lingjun Li
Journal:  Electrophoresis       Date:  2014-06-16       Impact factor: 3.535

3.  Has discovery-based cancer research been a bust?

Authors:  R J Epstein
Journal:  Clin Transl Oncol       Date:  2013-09-04       Impact factor: 3.405

4.  -Omics and cancer biomarkers: link to the biological truth or bear the consequences.

Authors:  Lance A Liotta; Emanuel F Petricoin
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2012-07-18       Impact factor: 4.254

Review 5.  Electron transfer dissociation mass spectrometry in proteomics.

Authors:  Min-Sik Kim; Akhilesh Pandey
Journal:  Proteomics       Date:  2012-01-23       Impact factor: 3.984

6.  Over 2300 phosphorylated peptide identifications with single-shot capillary zone electrophoresis-tandem mass spectrometry in a 100 min separation.

Authors:  Katelyn R Ludwig; Liangliang Sun; Guijie Zhu; Norman J Dovichi; Amanda B Hummon
Journal:  Anal Chem       Date:  2015-10-06       Impact factor: 6.986

Review 7.  Chemical Proteomic Approaches Targeting Cancer Stem Cells: A Review of Current Literature.

Authors:  Hye Jin Jung
Journal:  Cancer Genomics Proteomics       Date:  2017 Sep-Oct       Impact factor: 4.069

8.  Deciphering Phosphotyrosine-Dependent Signaling Networks in Cancer by SH2 Profiling.

Authors:  Kazuya Machida; Malik Khenkhar; Peter Nollau
Journal:  Genes Cancer       Date:  2012-05

Review 9.  Quantitative analysis of global phosphorylation changes with high-resolution tandem mass spectrometry and stable isotopic labeling.

Authors:  Hye Kyong Kweon; Philip C Andrews
Journal:  Methods       Date:  2013-04-21       Impact factor: 3.608

10.  Alterations of histone H1 phosphorylation during bladder carcinogenesis.

Authors:  Kelly H Telu; Besma Abbaoui; Jennifer M Thomas-Ahner; Debra L Zynger; Steven K Clinton; Michael A Freitas; Amir Mortazavi
Journal:  J Proteome Res       Date:  2013-06-17       Impact factor: 4.466

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