Literature DB >> 15657263

Stable isotope labeling with amino acids in cell culture (SILAC) for studying dynamics of protein abundance and posttranslational modifications.

Ramars Amanchy1, Dario Eluan Kalume, Akhilesh Pandey.   

Abstract

Stable isotope labeling with amino acids in cell culture (SILAC) is a simple and straightforward approach for in vivo incorporation of a tag into proteins for relative quantitation by mass spectrometry. SILAC is a simple, yet powerful, method for investigating the dynamics of protein abundance and posttranslational modifications. Here, we provide detailed instructions for using this method to study protein complexes, protein-protein interactions, and the dynamics of protein abundance and posttranslational modifications. We expect that SILAC will become a routine technique because of its applicability to most areas of cell biology. We have also developed a Web site (http://www.silac.org) to provide researchers with updated information about this method and related resources.

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Year:  2005        PMID: 15657263     DOI: 10.1126/stke.2672005pl2

Source DB:  PubMed          Journal:  Sci STKE        ISSN: 1525-8882


  44 in total

1.  15N-labeled brain enables quantification of proteome and phosphoproteome in cultured primary neurons.

Authors:  Lujian Liao; Richard C Sando; John B Farnum; Peter W Vanderklish; Anton Maximov; John R Yates
Journal:  J Proteome Res       Date:  2011-12-02       Impact factor: 4.466

2.  Absolute quantitation of isoforms of post-translationally modified proteins in transgenic organism.

Authors:  Yaojun Li; Yiwei Shu; Changchao Peng; Lin Zhu; Guangyu Guo; Ning Li
Journal:  Mol Cell Proteomics       Date:  2012-03-22       Impact factor: 5.911

3.  HTAPP: high-throughput autonomous proteomic pipeline.

Authors:  Kebing Yu; Arthur R Salomon
Journal:  Proteomics       Date:  2010-06       Impact factor: 3.984

4.  Minimizing back exchange in 18O/16O quantitative proteomics experiments by incorporation of immobilized trypsin into the initial digestion step.

Authors:  Joel R Sevinsky; Kristy J Brown; Benjamin J Cargile; Jonathan L Bundy; James L Stephenson
Journal:  Anal Chem       Date:  2007-01-24       Impact factor: 6.986

Review 5.  Fluorescence two-dimensional difference gel electrophoresis for biomaterial applications.

Authors:  Laura E McNamara; Matthew J Dalby; Mathis O Riehle; Richard Burchmore
Journal:  J R Soc Interface       Date:  2009-07-01       Impact factor: 4.118

6.  The dynamic stress-induced "O-GlcNAc-ome" highlights functions for O-GlcNAc in regulating DNA damage/repair and other cellular pathways.

Authors:  Natasha E Zachara; Henrik Molina; Ker Yi Wong; Akhilesh Pandey; Gerald W Hart
Journal:  Amino Acids       Date:  2010-07-31       Impact factor: 3.520

7.  Quantitative proteomics analysis of macrophage rafts reveals compartmentalized activation of the proteasome and of proteasome-mediated ERK activation in response to lipopolysaccharide.

Authors:  Suraj Dhungana; B Alex Merrick; Kenneth B Tomer; Michael B Fessler
Journal:  Mol Cell Proteomics       Date:  2008-09-23       Impact factor: 5.911

8.  Global impact of oncogenic Src on a phosphotyrosine proteome.

Authors:  Weifeng Luo; Robbert J Slebos; Salisha Hill; Ming Li; Jan Brábek; Ramars Amanchy; Raghothama Chaerkady; Akhilesh Pandey; Amy-Joan L Ham; Steven K Hanks
Journal:  J Proteome Res       Date:  2008-06-19       Impact factor: 4.466

9.  Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays.

Authors:  Ramars Amanchy; Jun Zhong; Henrik Molina; Raghothama Chaerkady; Akiko Iwahori; Dario Eluan Kalume; Mads Grønborg; Jos Joore; Leslie Cope; Akhilesh Pandey
Journal:  J Proteome Res       Date:  2008-08-13       Impact factor: 4.466

10.  Proteomics: challenges, techniques and possibilities to overcome biological sample complexity.

Authors:  Kondethimmanahalli Chandramouli; Pei-Yuan Qian
Journal:  Hum Genomics Proteomics       Date:  2009-12-08
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