Literature DB >> 20937268

Regulation of lin-4 miRNA expression, organismal growth and development by a conserved RNA binding protein in C. elegans.

John R Bracht1, Priscilla M Van Wynsberghe, Vanessa Mondol, Amy E Pasquinelli.   

Abstract

Transcription and multiple processing steps are required to produce specific 22 nucleotide microRNAs (miRNAs) that can regulate the expression of target genes. In C. elegans, mature lin-4 miRNA accumulates at the end of the first larval stage to repress its direct targets lin-14 and lin-28, allowing the progression of several somatic cell types to later larval fates. In this study, we characterized the expression of endogenous lin-4 and found that temporally regulated independent transcripts, but not constitutive lin-4 containing RNAs derived from an overlapping gene, are processed to mature lin-4 miRNA. Through an RNAi screen, we identified a conserved RNA binding protein gene rbm-28 (R05H10.2), homologous to the human RBM28 and yeast Nop4p proteins, that is important for lin-4 expression in C. elegans. We also demonstrate that rbm-28 genetically interacts with the lin-4 developmental timing pathway and uncover a previously unrecognized role for lin-14 and lin-28 in coordinating organismal growth.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20937268      PMCID: PMC2982876          DOI: 10.1016/j.ydbio.2010.10.003

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  64 in total

1.  Post-embryonic expression of C. elegans microRNAs belonging to the lin-4 and let-7 families in the hypodermis and the reproductive system.

Authors:  A Esquela-Kerscher; S M Johnson; L Bai; K Saito; J Partridge; K L Reinert; F J Slack
Journal:  Dev Dyn       Date:  2005-12       Impact factor: 3.780

2.  Two small regulatory RNAs establish opposing fates of a developmental axis.

Authors:  Fabio T S Nogueira; Shahinez Madi; Daniel H Chitwood; Michelle T Juarez; Marja C P Timmermans
Journal:  Genes Dev       Date:  2007-04-01       Impact factor: 11.361

3.  A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands.

Authors:  Alexander Stark; Natascha Bushati; Calvin H Jan; Pouya Kheradpour; Emily Hodges; Julius Brennecke; David P Bartel; Stephen M Cohen; Manolis Kellis
Journal:  Genes Dev       Date:  2008-01-01       Impact factor: 11.361

4.  Uncoupling of lin-14 mRNA and protein repression by nutrient deprivation in Caenorhabditis elegans.

Authors:  Janette Holtz; Amy E Pasquinelli
Journal:  RNA       Date:  2009-01-20       Impact factor: 4.942

5.  A new regulatory protein, KSRP, mediates exon inclusion through an intronic splicing enhancer.

Authors:  H Min; C W Turck; J M Nikolic; D L Black
Journal:  Genes Dev       Date:  1997-04-15       Impact factor: 11.361

6.  Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway.

Authors:  Damien Garcia; Sarah A Collier; Mary E Byrne; Robert A Martienssen
Journal:  Curr Biol       Date:  2006-05-09       Impact factor: 10.834

7.  A hierarchy of regulatory genes controls a larva-to-adult developmental switch in C. elegans.

Authors:  V Ambros
Journal:  Cell       Date:  1989-04-07       Impact factor: 41.582

8.  Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors.

Authors:  J F Cáceres; S Stamm; D M Helfman; A R Krainer
Journal:  Science       Date:  1994-09-16       Impact factor: 47.728

Review 9.  MiRNAs and cancer.

Authors:  Rosa Visone; Carlo M Croce
Journal:  Am J Pathol       Date:  2009-03-05       Impact factor: 4.307

10.  The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs.

Authors:  Michele Trabucchi; Paola Briata; Mariaflor Garcia-Mayoral; Astrid D Haase; Witold Filipowicz; Andres Ramos; Roberto Gherzi; Michael G Rosenfeld
Journal:  Nature       Date:  2009-05-20       Impact factor: 49.962

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  13 in total

1.  Autoregulation of lin-4 microRNA transcription by RNA activation (RNAa) in C. elegans.

Authors:  Michael J Turner; Alan L Jiao; Frank J Slack
Journal:  Cell Cycle       Date:  2014-01-07       Impact factor: 4.534

2.  Period homolog LIN-42 regulates miRNA transcription to impact developmental timing.

Authors:  Priscilla M Van Wynsberghe; Amy E Pasquinelli
Journal:  Worm       Date:  2014-12-07

Review 3.  Analysis of microRNA expression and function.

Authors:  Priscilla M Van Wynsberghe; Shih-Peng Chan; Frank J Slack; Amy E Pasquinelli
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

Review 4.  Circulatory microRNAs: promising non-invasive prognostic and diagnostic biomarkers for parasitic infections.

Authors:  Hossein Ghalehnoei; Abouzar Bagheri; Mahdi Fakhar; Mohammad Amir Mishan
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2019-10-15       Impact factor: 3.267

Review 5.  MicroRNAs and developmental timing.

Authors:  Victor Ambros
Journal:  Curr Opin Genet Dev       Date:  2011-04-29       Impact factor: 5.578

6.  The Period protein homolog LIN-42 negatively regulates microRNA biogenesis in C. elegans.

Authors:  Priscilla M Van Wynsberghe; Emily F Finnegan; Thomas Stark; Evan P Angelus; Kathryn E Homan; Gene W Yeo; Amy E Pasquinelli
Journal:  Dev Biol       Date:  2014-03-31       Impact factor: 3.582

7.  An Epigenetic Priming Mechanism Mediated by Nutrient Sensing Regulates Transcriptional Output during C. elegans Development.

Authors:  Natalia Stec; Katja Doerfel; Kelly Hills-Muckey; Victoria M Ettorre; Sevinc Ercan; Wolfgang Keil; Christopher M Hammell
Journal:  Curr Biol       Date:  2020-12-22       Impact factor: 10.834

8.  Protocols for the Analysis of microRNA Expression, Biogenesis, and Function in Immune Cells.

Authors:  Nannan Zhang; Guowu Hu; Timothy G Myers; Peter R Williamson
Journal:  Curr Protoc Immunol       Date:  2019-09

9.  LentiRILES, a miRNA-ON sensor system for monitoring the functionality of miRNA in cancer biology and therapy.

Authors:  Viorel Simion; Claire Loussouarn; Yoan Laurent; Loris Roncali; David Gosset; Flora Reverchon; Audrey Rousseau; Francisco Martin; Patrick Midoux; Chantal Pichon; Emmanuel Garcion; Patrick Baril
Journal:  RNA Biol       Date:  2021-09-27       Impact factor: 4.766

10.  Characterization and comparative profiling of miRNAs in invasive Bemisia tabaci (Gennadius) B and Q.

Authors:  Qiang Guo; Yun-Li Tao; Dong Chu
Journal:  PLoS One       Date:  2013-03-20       Impact factor: 3.240

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