Literature DB >> 20933095

Dynamic model of CHO cell metabolism.

Ryan P Nolan1, Kyongbum Lee.   

Abstract

Fed-batch cultures are extensively used for the production of therapeutic proteins. However, process optimization is hampered by lack of quantitative models of mammalian cellular metabolism in these cultures. This paper presents a new kinetic model of CHO cell metabolism and a novel framework for simulating the dynamics of metabolic and biosynthetic pathways of these cells grown in fed-batch culture. The model defines a subset of the intracellular reactions with kinetic rate expressions based on extracellular metabolite concentrations and temperature- and redox-dependent regulatory variables. The simulation uses the rate expressions to calculate pseudo-steady state flux distributions and extracellular metabolite concentrations at discrete time points. Experimental data collected in this study for several different CHO cell fed-batch cultures are used to derive the rate expressions, fit the parameters, and validate the model. The simulations accurately predicted the effects of process variables, including temperature shift, seed density, specific productivity, and nutrient concentrations.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20933095     DOI: 10.1016/j.ymben.2010.09.003

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  29 in total

1.  Analysis of Chinese hamster ovary cell metabolism through a combined computational and experimental approach.

Authors:  Ning Chen; Mark H Bennett; Cleo Kontoravdi
Journal:  Cytotechnology       Date:  2013-11-29       Impact factor: 2.058

2.  A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism.

Authors:  Hooman Hefzi; Kok Siong Ang; Michael Hanscho; Aarash Bordbar; David Ruckerbauer; Meiyappan Lakshmanan; Camila A Orellana; Deniz Baycin-Hizal; Yingxiang Huang; Daniel Ley; Veronica S Martinez; Sarantos Kyriakopoulos; Natalia E Jiménez; Daniel C Zielinski; Lake-Ee Quek; Tune Wulff; Johnny Arnsdorf; Shangzhong Li; Jae Seong Lee; Giuseppe Paglia; Nicolas Loira; Philipp N Spahn; Lasse E Pedersen; Jahir M Gutierrez; Zachary A King; Anne Mathilde Lund; Harish Nagarajan; Alex Thomas; Alyaa M Abdel-Haleem; Juergen Zanghellini; Helene F Kildegaard; Bjørn G Voldborg; Ziomara P Gerdtzen; Michael J Betenbaugh; Bernhard O Palsson; Mikael R Andersen; Lars K Nielsen; Nicole Borth; Dong-Yup Lee; Nathan E Lewis
Journal:  Cell Syst       Date:  2016-11-23       Impact factor: 10.304

3.  Proteomic analysis of Chinese hamster ovary cells.

Authors:  Deniz Baycin-Hizal; David L Tabb; Raghothama Chaerkady; Lily Chen; Nathan E Lewis; Harish Nagarajan; Vishaldeep Sarkaria; Amit Kumar; Daniel Wolozny; Joe Colao; Elena Jacobson; Yuan Tian; Robert N O'Meally; Sharon S Krag; Robert N Cole; Bernhard O Palsson; Hui Zhang; Michael Betenbaugh
Journal:  J Proteome Res       Date:  2012-10-05       Impact factor: 4.466

Review 4.  Engineering biological systems using automated biofoundries.

Authors:  Ran Chao; Shekhar Mishra; Tong Si; Huimin Zhao
Journal:  Metab Eng       Date:  2017-06-07       Impact factor: 9.783

5.  Metabolic engineering of Chinese hamster ovary cells: towards a bioengineered heparin.

Authors:  Jong Youn Baik; Leyla Gasimli; Bo Yang; Payel Datta; Fuming Zhang; Charles A Glass; Jeffrey D Esko; Robert J Linhardt; Susan T Sharfstein
Journal:  Metab Eng       Date:  2012-02-06       Impact factor: 9.783

6.  Stable inhibition of mmu-miR-466h-5p improves apoptosis resistance and protein production in CHO cells.

Authors:  Aliaksandr Druz; Young-Jin Son; Michael Betenbaugh; Joseph Shiloach
Journal:  Metab Eng       Date:  2013-01-29       Impact factor: 9.783

7.  Probabilistic strain optimization under constraint uncertainty.

Authors:  Mona Yousofshahi; Michael Orshansky; Kyongbum Lee; Soha Hassoun
Journal:  BMC Syst Biol       Date:  2013-03-29

Review 8.  Macroscopic modeling of mammalian cell growth and metabolism.

Authors:  Bassem Ben Yahia; Laetitia Malphettes; Elmar Heinzle
Journal:  Appl Microbiol Biotechnol       Date:  2015-07-22       Impact factor: 4.813

9.  Towards controlling the glycoform: a model framework linking extracellular metabolites to antibody glycosylation.

Authors:  Philip M Jedrzejewski; Ioscani Jimenez del Val; Antony Constantinou; Anne Dell; Stuart M Haslam; Karen M Polizzi; Cleo Kontoravdi
Journal:  Int J Mol Sci       Date:  2014-03-14       Impact factor: 5.923

10.  A Single Dynamic Metabolic Model Can Describe mAb Producing CHO Cell Batch and Fed-Batch Cultures on Different Culture Media.

Authors:  Julien Robitaille; Jingkui Chen; Mario Jolicoeur
Journal:  PLoS One       Date:  2015-09-02       Impact factor: 3.240

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