Literature DB >> 20924230

At the intersection of public-health informatics and bioinformatics: using advanced Web technologies for phylogeography.

Matthew Scotch1, Changjiang Mei, Cynthia Brandt, Indra Neil Sarkar, Kei Cheung.   

Abstract

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Year:  2010        PMID: 20924230      PMCID: PMC3150210          DOI: 10.1097/EDE.0b013e3181f534dd

Source DB:  PubMed          Journal:  Epidemiology        ISSN: 1044-3983            Impact factor:   4.822


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  12 in total

Review 1.  The phylogeography of human viruses.

Authors:  Edward C Holmes
Journal:  Mol Ecol       Date:  2004-04       Impact factor: 6.185

2.  A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data.

Authors:  Lennart J G Post; Marco Roos; M Scott Marshall; Roel van Driel; Timo M Breit
Journal:  Bioinformatics       Date:  2007-09-19       Impact factor: 6.937

3.  The Taverna Interaction Service: enabling manual interaction in workflows.

Authors:  Anders Lanzén; Tom Oinn
Journal:  Bioinformatics       Date:  2008-03-12       Impact factor: 6.937

4.  Integrating ARC grid middleware with Taverna workflows.

Authors:  Hajo N Krabbenhöft; Steffen Möller; Daniel Bayer
Journal:  Bioinformatics       Date:  2008-03-19       Impact factor: 6.937

5.  A high-resolution genetic signature of demographic and spatial expansion in epizootic rabies virus.

Authors:  Roman Biek; J Caroline Henderson; Lance A Waller; Charles E Rupprecht; Leslie A Real
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

Review 6.  Biodiversity informatics: organizing and linking information across the spectrum of life.

Authors:  Indra Neil Sarkar
Journal:  Brief Bioinform       Date:  2007-08-17       Impact factor: 11.622

7.  Bio2RDF: towards a mashup to build bioinformatics knowledge systems.

Authors:  François Belleau; Marc-Alexandre Nolin; Nicole Tourigny; Philippe Rigault; Jean Morissette
Journal:  J Biomed Inform       Date:  2008-03-21       Impact factor: 6.317

8.  Human and animal sentinels for shared health risks.

Authors:  Peter Rabinowitz; Matthew Scotch; Lisa Conti
Journal:  Vet Ital       Date:  2009 Jan-Mar       Impact factor: 1.101

9.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

10.  Influenza A H5N1 immigration is filtered out at some international borders.

Authors:  Robert G Wallace; Walter M Fitch
Journal:  PLoS One       Date:  2008-02-27       Impact factor: 3.240

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  6 in total

1.  Bioinformatics for the Origin and Evolution of Viruses.

Authors:  Jiajia Chen; Yuxin Zhang; Bairong Shen
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

2.  Diffusion of influenza viruses among migratory birds with a focus on the Southwest United States.

Authors:  Matthew Scotch; Tommy Tsan-Yuk Lam; Kristy L Pabilonia; Theodore Anderson; John Baroch; Dennis Kohler; Thomas J DeLiberto
Journal:  Infect Genet Evol       Date:  2014-06-06       Impact factor: 3.342

3.  Phylogeography of swine influenza H3N2 in the United States: translational public health for zoonotic disease surveillance.

Authors:  Matthew Scotch; Changjiang Mei
Journal:  Infect Genet Evol       Date:  2012-11-06       Impact factor: 3.342

4.  GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.

Authors:  Arjun Magge; Davy Weissenbacher; Karen O'Connor; Tasnia Tahsin; Graciela Gonzalez-Hernandez; Matthew Scotch
Journal:  Bioinformatics       Date:  2020-12-22       Impact factor: 6.937

5.  Phylogeography of influenza A H5N1 clade 2.2.1.1 in Egypt.

Authors:  Matthew Scotch; Changjiang Mei; Yilma J Makonnen; Julio Pinto; AbdelHakim Ali; Sally Vegso; Michael Kane; Indra Neil Sarkar; Peter Rabinowitz
Journal:  BMC Genomics       Date:  2013-12-10       Impact factor: 3.969

6.  Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography.

Authors:  Matthew Scotch; Tasnia Tahsin; Davy Weissenbacher; Karen O'Connor; Arjun Magge; Matteo Vaiente; Marc A Suchard; Graciela Gonzalez-Hernandez
Journal:  Virus Evol       Date:  2019-02-28
  6 in total

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