Literature DB >> 18337261

The Taverna Interaction Service: enabling manual interaction in workflows.

Anders Lanzén1, Tom Oinn.   

Abstract

UNLABELLED: Taverna is an application that eases the integration of tools and databases for life science research by the construction of workflows. The Taverna Interaction Service extends the functionality of Taverna by defining human interaction within a workflow and acting as a mediation layer between the automated workflow engine and one or more users. AVAILABILITY: Taverna, the Interaction Service plug-in and web application are available as open source and can be downloaded from http://taverna.sourceforge.net/

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Year:  2008        PMID： 18337261     DOI： 10.1093/bioinformatics/btn082

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

1.  At the intersection of public-health informatics and bioinformatics: using advanced Web technologies for phylogeography.

Authors:  Matthew Scotch; Changjiang Mei; Cynthia Brandt; Indra Neil Sarkar; Kei Cheung
Journal:  Epidemiology       Date:  2010-11       Impact factor: 4.822

2.  WebLab: a data-centric, knowledge-sharing bioinformatic platform.

Authors:  Xiaoqiao Liu; Jianmin Wu; Jun Wang; Xiaochuan Liu; Shuqi Zhao; Zhe Li; Lei Kong; Xiaocheng Gu; Jingchu Luo; Ge Gao
Journal:  Nucleic Acids Res       Date:  2009-05-22       Impact factor: 16.971

3.  POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data.

Authors:  Ethalinda K S Cannon; Scott M Birkett; Bremen L Braun; Sateesh Kodavali; Douglas M Jennewein; Alper Yilmaz; Valentin Antonescu; Corina Antonescu; Lisa C Harper; Jack M Gardiner; Mary L Schaeffer; Darwin A Campbell; Carson M Andorf; Destri Andorf; Damon Lisch; Karen E Koch; Donald R McCarty; John Quackenbush; Erich Grotewold; Carol M Lushbough; Taner Z Sen; Carolyn J Lawrence
Journal:  Int J Plant Genomics       Date:  2011-12-27

4.  Text mining for the biocuration workflow.

Authors:  Lynette Hirschman; Gully A P C Burns; Martin Krallinger; Cecilia Arighi; K Bretonnel Cohen; Alfonso Valencia; Cathy H Wu; Andrew Chatr-Aryamontri; Karen G Dowell; Eva Huala; Anália Lourenço; Robert Nash; Anne-Lise Veuthey; Thomas Wiegers; Andrew G Winter
Journal:  Database (Oxford)       Date:  2012-04-18       Impact factor: 3.451

5.  The iPlant Collaborative: Cyberinfrastructure for Plant Biology.

Authors:  Stephen A Goff; Matthew Vaughn; Sheldon McKay; Eric Lyons; Ann E Stapleton; Damian Gessler; Naim Matasci; Liya Wang; Matthew Hanlon; Andrew Lenards; Andy Muir; Nirav Merchant; Sonya Lowry; Stephen Mock; Matthew Helmke; Adam Kubach; Martha Narro; Nicole Hopkins; David Micklos; Uwe Hilgert; Michael Gonzales; Chris Jordan; Edwin Skidmore; Rion Dooley; John Cazes; Robert McLay; Zhenyuan Lu; Shiran Pasternak; Lars Koesterke; William H Piel; Ruth Grene; Christos Noutsos; Karla Gendler; Xin Feng; Chunlao Tang; Monica Lent; Seung-Jin Kim; Kristian Kvilekval; B S Manjunath; Val Tannen; Alexandros Stamatakis; Michael Sanderson; Stephen M Welch; Karen A Cranston; Pamela Soltis; Doug Soltis; Brian O'Meara; Cecile Ane; Tom Brutnell; Daniel J Kleibenstein; Jeffery W White; James Leebens-Mack; Michael J Donoghue; Edgar P Spalding; Todd J Vision; Christopher R Myers; David Lowenthal; Brian J Enquist; Brad Boyle; Ali Akoglu; Greg Andrews; Sudha Ram; Doreen Ware; Lincoln Stein; Dan Stanzione
Journal:  Front Plant Sci       Date:  2011-07-25       Impact factor: 5.753

6.  Mining collections of compounds with Screening Assistant 2.

Authors:  Vincent Le Guilloux; Alban Arrault; Lionel Colliandre; Stéphane Bourg; Philippe Vayer; Luc Morin-Allory
Journal:  J Cheminform       Date:  2012-08-31       Impact factor: 5.514

7.  A knowledge-based decision support system in bioinformatics: an application to protein complex extraction.

Authors:  Antonino Fiannaca; Massimo La Rosa; Alfonso Urso; Riccardo Rizzo; Salvatore Gaglio
Journal:  BMC Bioinformatics       Date:  2013-01-14       Impact factor: 3.169

8.  Ten simple rules for making a software tool workflow-ready.

Authors:  Paul Brack; Peter Crowther; Stian Soiland-Reyes; Stuart Owen; Douglas Lowe; Alan R Williams; Quentin Groom; Mathias Dillen; Frederik Coppens; Björn Grüning; Ignacio Eguinoa; Philip Ewels; Carole Goble
Journal:  PLoS Comput Biol       Date:  2022-03-24       Impact factor: 4.475
  8 in total

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