Literature DB >> 20923230

One-step sample concentration, purification, and albumin depletion method for urinary proteomics.

Ali R Vaezzadeh1, Andrew C Briscoe, Hanno Steen, Richard S Lee.   

Abstract

Workflows in urinary proteomics studies are often complex and require many steps to enrich, purify, deplete, and separate the complex mixture. Many of these methods are laborious, are time-consuming, and have the potential for error. Although individual steps of these methods have been previously studied, their downstream compatibilities with fractionation technologies such as off-gel electrophoresis have not been investigated. We developed a one-step sample preparation workflow that simultaneously (i) concentrates proteins, (ii) purifies by removing salts and other low molecular weight compounds, and (iii) depletes (albumin) from urine samples. This simple and robust workflow can be multiplexed and is compatible with a diverse range of downstream multidimensional separation technologies. Additionally, because of its high reproducibility and flexibility in processing samples with different volumes and concentrations, it has the potential to be used for standardization of urinary proteomics studies, as well as for studying other body fluids of similar complexity.

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Year:  2010        PMID: 20923230      PMCID: PMC2974758          DOI: 10.1021/pr100924s

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  37 in total

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Authors:  C S Spahr; M T Davis; M D McGinley; J H Robinson; E J Bures; J Beierle; J Mort; P L Courchesne; K Chen; R C Wahl; W Yu; R Luethy; S D Patterson
Journal:  Proteomics       Date:  2001-01       Impact factor: 3.984

2.  Protein purification by Off-Gel electrophoresis.

Authors:  Alexandra Ros; Michel Faupel; Hervé Mees; Jan van Oostrum; Rosaria Ferrigno; Frédéric Reymond; Philippe Michel; Joël S Rossier; Hubert H Girault
Journal:  Proteomics       Date:  2002-02       Impact factor: 3.984

3.  Protein fractionation in a multicompartment device using Off-Gel isoelectric focusing.

Authors:  Philippe E Michel; Frédéric Reymond; Isabelle L Arnaud; Jacques Josserand; Hubert H Girault; Joel S Rossier
Journal:  Electrophoresis       Date:  2003-01       Impact factor: 3.535

4.  An alternative to tandem mass spectrometry: isoelectric point and accurate mass for the identification of peptides.

Authors:  Benjamin J Cargile; James L Stephenson
Journal:  Anal Chem       Date:  2004-01-15       Impact factor: 6.986

5.  2-D hydrophilic interaction liquid chromatography-RP separation in urinary proteomics--minimizing variability through improved downstream workflow compatibility.

Authors:  Håvard Loftheim; Thien Duc Nguyen; Helle Malerød; Elsa Lundanes; Anders Asberg; Léon Reubsaet
Journal:  J Sep Sci       Date:  2010-03       Impact factor: 3.645

6.  Towards a comprehensive database of proteins from the urine of patients with bladder cancer.

Authors:  H H Rasmussen; T F Orntoft; H Wolf; J E Celis
Journal:  J Urol       Date:  1996-06       Impact factor: 7.450

7.  A comparison of immobilized pH gradient isoelectric focusing and strong-cation-exchange chromatography as a first dimension in shotgun proteomics.

Authors:  Amal S Essader; Benjamin J Cargile; Jonathan L Bundy; James L Stephenson
Journal:  Proteomics       Date:  2005-01       Impact factor: 3.984

8.  Two-dimensional electrophoresis of human urinary proteins following concentration by dye precipitation.

Authors:  T Marshall; K Williams
Journal:  Electrophoresis       Date:  1996-07       Impact factor: 3.535

9.  Optimized preparation of urine samples for two-dimensional electrophoresis and initial application to patient samples.

Authors:  Daniel Lafitte; Bertrand Dussol; Soren Andersen; Alain Vazi; Patricia Dupuy; Ole N Jensen; Yvon Berland; Jean-Michel Verdier
Journal:  Clin Biochem       Date:  2002-11       Impact factor: 3.281

10.  Characterization of the human urinary proteome: a method for high-resolution display of urinary proteins on two-dimensional electrophoresis gels with a yield of nearly 1400 distinct protein spots.

Authors:  Rembert Pieper; Christine L Gatlin; Andrew M McGrath; Anthony J Makusky; Madhu Mondal; Michael Seonarain; Erin Field; Courtney R Schatz; Marla A Estock; Nasir Ahmed; Norman G Anderson; Sandra Steiner
Journal:  Proteomics       Date:  2004-04       Impact factor: 3.984

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  8 in total

1.  Evaluation of urinary protein precipitation protocols for the multidisciplinary approach to the study of chronic pelvic pain research network.

Authors:  Karen R Jonscher; Andrea A Osypuk; Adrie van Bokhoven; M Scott Lucia
Journal:  J Biomol Tech       Date:  2014-12

2.  A classifier based on accurate mass measurements to aid large scale, unbiased glycoproteomics.

Authors:  John W Froehlich; Eric D Dodds; Mathias Wilhelm; Oliver Serang; Judith A Steen; Richard S Lee
Journal:  Mol Cell Proteomics       Date:  2013-02-25       Impact factor: 5.911

Review 3.  Liquid-phase-based separation systems for depletion, prefractionation and enrichment of proteins in biological fluids and matrices for in-depth proteomics analysis--an update covering the period 2008-2011.

Authors:  Subhashini Selvaraju; Ziad El Rassi
Journal:  Electrophoresis       Date:  2011-11-28       Impact factor: 3.535

4.  The GlycoFilter: a simple and comprehensive sample preparation platform for proteomics, N-glycomics and glycosylation site assignment.

Authors:  Hui Zhou; John W Froehlich; Andrew C Briscoe; Richard S Lee
Journal:  Mol Cell Proteomics       Date:  2013-07-02       Impact factor: 5.911

5.  Universal Solid-Phase Reversible Sample-Prep for Concurrent Proteome and N-Glycome Characterization.

Authors:  Hui Zhou; Samantha Morley; Stephen Kostel; Michael R Freeman; Vivek Joshi; David Brewster; Richard S Lee
Journal:  J Proteome Res       Date:  2016-02-08       Impact factor: 4.466

6.  Characterizing Patients with Recurrent Urinary Tract Infections in Vesicoureteral Reflux: A Pilot Study of the Urinary Proteome.

Authors:  Dijana Vitko; Patricia S Cho; Stephen A Kostel; Shannon E DiMartino; Lily D Cabour; Matthew A Migliozzi; Tanya Logvinenko; Peter G Warren; John W Froehlich; Richard S Lee
Journal:  Mol Cell Proteomics       Date:  2020-01-02       Impact factor: 5.911

7.  Urinary Proteomics Yield Pathological Insights for Ureteropelvic Junction Obstruction.

Authors:  John W Froehlich; Stephen A Kostel; Patricia S Cho; Andrew C Briscoe; Hanno Steen; Ali R Vaezzadeh; Richard S Lee
Journal:  Mol Cell Proteomics       Date:  2016-05-23       Impact factor: 5.911

8.  A comprehensive analysis and annotation of human normal urinary proteome.

Authors:  Mindi Zhao; Menglin Li; Yehong Yang; Zhengguang Guo; Ying Sun; Chen Shao; Mingxi Li; Wei Sun; Youhe Gao
Journal:  Sci Rep       Date:  2017-06-08       Impact factor: 4.379

  8 in total

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