Literature DB >> 14681484

NASCArrays: a repository for microarray data generated by NASC's transcriptomics service.

David J Craigon1, Nick James, John Okyere, Janet Higgins, Joan Jotham, Sean May.   

Abstract

NASC operates an Affymetrix 'GeneChip' (microarray) service for the Arabidopsis thaliana community. All data produced by the service are publicly available through our microarray data base 'NASCArrays' published at http://affymetrix. arabidopsis.info. The data are accessible through text searching and a series of data mining tools. All data are annotated with sample preparation details, and the original Affymetrix data are available for download. The database aims to be MIAME supportive and provide a coordinated resource for re searchers interested in the transcriptome of Arabidopsis. Using this database, data produced will be shared with other databases worldwide.

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Year:  2004        PMID： 14681484      PMCID： PMC308867          DOI： 10.1093/nar/gkh133

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  11 in total

1.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

2.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.

Authors:  Ron Edgar; Michael Domrachev; Alex E Lash
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  The Stanford Microarray Database: data access and quality assessment tools.

Authors:  Jeremy Gollub; Catherine A Ball; Gail Binkley; Janos Demeter; David B Finkelstein; Joan M Hebert; Tina Hernandez-Boussard; Heng Jin; Miroslava Kaloper; John C Matese; Mark Schroeder; Patrick O Brown; David Botstein; Gavin Sherlock
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

5.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

Review 6.  Arabidopsis thaliana: a model plant for genome analysis.

Authors:  D W Meinke; J M Cherry; C Dean; S D Rounsley; M Koornneef
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

7.  ArrayExpress--a public repository for microarray gene expression data at the EBI.

Authors:  Alvis Brazma; Helen Parkinson; Ugis Sarkans; Mohammadreza Shojatalab; Jaak Vilo; Niran Abeygunawardena; Ele Holloway; Misha Kapushesky; Patrick Kemmeren; Gonzalo Garcia Lara; Ahmet Oezcimen; Philippe Rocca-Serra; Susanna-Assunta Sansone
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

8.  The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community.

Authors:  Seung Yon Rhee; William Beavis; Tanya Z Berardini; Guanghong Chen; David Dixon; Aisling Doyle; Margarita Garcia-Hernandez; Eva Huala; Gabriel Lander; Mary Montoya; Neil Miller; Lukas A Mueller; Suparna Mundodi; Leonore Reiser; Julie Tacklind; Dan C Weems; Yihe Wu; Iris Xu; Daniel Yoo; Jungwon Yoon; Peifen Zhang
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

9.  Expression monitoring by hybridization to high-density oligonucleotide arrays.

Authors:  D J Lockhart; H Dong; M C Byrne; M T Follettie; M V Gallo; M S Chee; M Mittmann; C Wang; M Kobayashi; H Horton; E L Brown
Journal:  Nat Biotechnol       Date:  1996-12       Impact factor: 54.908

10.  Design and implementation of microarray gene expression markup language (MAGE-ML).

Authors:  Paul T Spellman; Michael Miller; Jason Stewart; Charles Troup; Ugis Sarkans; Steve Chervitz; Derek Bernhart; Gavin Sherlock; Catherine Ball; Marc Lepage; Marcin Swiatek; W L Marks; Jason Goncalves; Scott Markel; Daniel Iordan; Mohammadreza Shojatalab; Angel Pizarro; Joe White; Robert Hubley; Eric Deutsch; Martin Senger; Bruce J Aronow; Alan Robinson; Doug Bassett; Christian J Stoeckert; Alvis Brazma
Journal:  Genome Biol       Date:  2002-08-23       Impact factor: 13.583
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  181 in total

1.  Transcriptional programs of early reproductive stages in Arabidopsis.

Authors:  Lars Hennig; Wilhelm Gruissem; Ueli Grossniklaus; Claudia Köhler
Journal:  Plant Physiol       Date:  2004-07-09       Impact factor: 8.340

2.  GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.

Authors:  Philip Zimmermann; Matthias Hirsch-Hoffmann; Lars Hennig; Wilhelm Gruissem
Journal:  Plant Physiol       Date:  2004-09       Impact factor: 8.340

Review 3.  Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways.

Authors:  Takeshi Obayashi; Kengo Kinoshita
Journal:  J Plant Res       Date:  2010-04-10       Impact factor: 2.629

4.  Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources.

Authors:  Masami Yokota Hirai; Yuji Sawada; Shigehiko Kanaya; Takashi Kuromori; Masatomo Kobayashi; Romy Klausnitzer; Kosuke Hanada; Kenji Akiyama; Tetsuya Sakurai; Kazuki Saito; Kazuo Shinozaki
Journal:  J Plant Res       Date:  2010-04-06       Impact factor: 2.629

5.  Salicylic Acid biosynthesis and metabolism.

Authors:  D'Maris Amick Dempsey; A Corina Vlot; Mary C Wildermuth; Daniel F Klessig
Journal:  Arabidopsis Book       Date:  2011-12-20

6.  Comparison of transcript profiling on Arabidopsis microarray platform technologies.

Authors:  Jeffrey D Pylatuik; Pierre R Fobert
Journal:  Plant Mol Biol       Date:  2005-07       Impact factor: 4.076

Review 7.  Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana.

Authors:  Elena A Vidal; Karem P Tamayo; Rodrigo A Gutierrez
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Nov-Dec

8.  Temporal global expression data reveal known and novel salicylate-impacted processes and regulators mediating powdery mildew growth and reproduction on Arabidopsis.

Authors:  Divya Chandran; Yu Chuan Tai; Gregory Hather; Julia Dewdney; Carine Denoux; Diane G Burgess; Frederick M Ausubel; Terence P Speed; Mary C Wildermuth
Journal:  Plant Physiol       Date:  2009-01-28       Impact factor: 8.340

9.  DGEM--a microarray gene expression database for primary human disease tissues.

Authors:  Yuni Xia; Andrew Campen; Dan Rigsby; Ying Guo; Xingdong Feng; Eric W Su; Mathew Palakal; Shuyu Li
Journal:  Mol Diagn Ther       Date:  2007       Impact factor: 4.074

10.  VirtualPlant: a software platform to support systems biology research.

Authors:  Manpreet S Katari; Steve D Nowicki; Felipe F Aceituno; Damion Nero; Jonathan Kelfer; Lee Parnell Thompson; Juan M Cabello; Rebecca S Davidson; Arthur P Goldberg; Dennis E Shasha; Gloria M Coruzzi; Rodrigo A Gutiérrez
Journal:  Plant Physiol       Date:  2009-12-09       Impact factor: 8.340
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