Literature DB >> 20889772

Genome analysis of deep-sea thermophilic phage D6E.

Yiqian Wang1, Xiaobo Zhang.   

Abstract

In deep-sea hydrothermal vent communities, viruses play very important roles. However vent thermophilic bacteriophages remain largely unexplored. In this investigation, a novel vent Geobacillus bacteriophage, D6E, was characterized. Based on comparative genomics and proteomics analyses, the results showed an extensive mosaicism of D6E genome with other mesophilic or thermophilic phages.

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Year:  2010        PMID： 20889772      PMCID： PMC2988599          DOI： 10.1128/AEM.01270-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  31 in total

1.  Nucleotide sequence of coliphage HK620 and the evolution of lambdoid phages.

Authors:  A J Clark; W Inwood; T Cloutier; T S Dhillon
Journal:  J Mol Biol       Date:  2001-08-24       Impact factor: 5.469

2.  Continuous enrichment culture and molecular monitoring to investigate the microbial diversity of thermophiles inhabiting deep-sea hydrothermal ecosystems.

Authors:  Anne Postec; Laurent Urios; Françoise Lesongeur; Bernard Ollivier; Joël Querellou; Anne Godfroy
Journal:  Curr Microbiol       Date:  2005-02-08       Impact factor: 2.188

Review 3.  Marine viruses--major players in the global ecosystem.

Authors:  Curtis A Suttle
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

4.  Proteomic analysis of interactions between a deep-sea thermophilic bacteriophage and its host at high temperature.

Authors:  Dahai Wei; Xiaobo Zhang
Journal:  J Virol       Date:  2009-12-16       Impact factor: 5.103

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Prediction of transcription terminators in bacterial genomes.

Authors:  M D Ermolaeva; H G Khalak; O White; H O Smith; S L Salzberg
Journal:  J Mol Biol       Date:  2000-08-04       Impact factor: 5.469

7.  Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages.

Authors:  R J Juhala; M E Ford; R L Duda; A Youlton; G F Hatfull; R W Hendrix
Journal:  J Mol Biol       Date:  2000-05-26       Impact factor: 5.469

8.  Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus.

Authors:  Hideto Takami; Yoshihiro Takaki; Gab-Joo Chee; Shinro Nishi; Shigeru Shimamura; Hiroko Suzuki; Satomi Matsui; Ikuo Uchiyama
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

9.  Identification and characterization of a single-stranded DNA-binding protein from thermophilic bacteriophage GVE2.

Authors:  Dahai Wei; Xiaobo Zhang
Journal:  Virus Genes       Date:  2007-10-16       Impact factor: 2.332

10.  The marine viromes of four oceanic regions.

Authors:  Florent E Angly; Ben Felts; Mya Breitbart; Peter Salamon; Robert A Edwards; Craig Carlson; Amy M Chan; Matthew Haynes; Scott Kelley; Hong Liu; Joseph M Mahaffy; Jennifer E Mueller; Jim Nulton; Robert Olson; Rachel Parsons; Steve Rayhawk; Curtis A Suttle; Forest Rohwer
Journal:  PLoS Biol       Date:  2006-11       Impact factor: 8.029
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  13 in total

1.  Genome sequence of a novel deep-sea vent epsilonproteobacterial phage provides new insight into the co-evolution of Epsilonproteobacteria and their phages.

Authors:  Yukari Yoshida-Takashima; Yoshihiro Takaki; Shigeru Shimamura; Takuro Nunoura; Ken Takai
Journal:  Extremophiles       Date:  2013-03-20       Impact factor: 2.395

2.  Isolation, growth and genome of the Rhodothermus RM378 thermophilic bacteriophage.

Authors:  Sigridur Hjorleifsdottir; Arnthor Aevarsson; Gudmundur O Hreggvidsson; Olafur H Fridjonsson; Jakob K Kristjansson
Journal:  Extremophiles       Date:  2013-12-07       Impact factor: 2.395

3.  Genomic characterization of a temperate phage of the psychrotolerant deep-sea bacterium Aurantimonas sp.

Authors:  Mitsuhiro Yoshida; Yukari Yoshida-Takashima; Takuro Nunoura; Ken Takai
Journal:  Extremophiles       Date:  2014-10-30       Impact factor: 2.395

4.  vB_BcM_Sam46 and vB_BcM_Sam112, members of a new bacteriophage genus with unusual small terminase structure.

Authors:  Olesya A Kazantseva; Emma G Piligrimova; Andrey M Shadrin
Journal:  Sci Rep       Date:  2021-06-09       Impact factor: 4.379

5.  Novel bacteriophages containing a genome of another bacteriophage within their genomes.

Authors:  Maud M Swanson; Brian Reavy; Kira S Makarova; Peter J Cock; David W Hopkins; Lesley Torrance; Eugene V Koonin; Michael Taliansky
Journal:  PLoS One       Date:  2012-07-17       Impact factor: 3.240

6.  Draft Genome Sequence of Geobacillus kaustophilus GBlys, a Lysogenic Strain with Bacteriophage OH2.

Authors:  Katsumi Doi; Kazuki Mori; Hindra Martono; Yuko Nagayoshi; Yasuhiro Fujino; Kosuke Tashiro; Satoru Kuhara; Toshihisa Ohshima
Journal:  Genome Announc       Date:  2013-08-15

7.  Deep-Sea Hydrothermal Vent Viruses Compensate for Microbial Metabolism in Virus-Host Interactions.

Authors:  Tianliang He; Hongyun Li; Xiaobo Zhang
Journal:  mBio       Date:  2017-07-11       Impact factor: 7.867

8.  Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water.

Authors:  Kai Tang; Dan Lin; Qiang Zheng; Keshao Liu; Yujie Yang; Yu Han; Nianzhi Jiao
Journal:  BMC Genomics       Date:  2017-06-27       Impact factor: 3.969

9.  The role of interactions between bacterial chaperone, aspartate aminotransferase, and viral protein during virus infection in high temperature environment: the interactions between bacterium and virus proteins.

Authors:  Yanjiang Chen; Dahai Wei; Yiqian Wang; Xiaobo Zhang
Journal:  BMC Microbiol       Date:  2013-02-26       Impact factor: 3.605

10.  Structure of the large terminase from a hyperthermophilic virus reveals a unique mechanism for oligomerization and ATP hydrolysis.

Authors:  Rui-Gang Xu; Huw T Jenkins; Alfred A Antson; Sandra J Greive
Journal:  Nucleic Acids Res       Date:  2017-12-15       Impact factor: 16.971
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