Literature DB >> 20876290

Reproducible science.

Arturo Casadevall, Ferric C Fang.   

Abstract

The reproducibility of an experimental result is a fundamental assumption in science. Yet, results that are merely confirmatory of previous findings are given low priority and can be difficult to publish. Furthermore, the complex and chaotic nature of biological systems imposes limitations on the replicability of scientific experiments. This essay explores the importance and limits of reproducibility in scientific manuscripts.

Mesh：

Year:  2010        PMID： 20876290      PMCID： PMC2981311          DOI： 10.1128/IAI.00908-10

Source DB:  PubMed          Journal:  Infect Immun        ISSN： 0019-9567            Impact factor:   3.441


  14 in total

1.  The replication requirement.

Authors:  V J Vieland
Journal:  Nat Genet       Date:  2001-11       Impact factor: 38.330

2.  Replication validity of genetic association studies.

Authors:  J P Ioannidis; E E Ntzani; T A Trikalinos; D G Contopoulos-Ioannidis
Journal:  Nat Genet       Date:  2001-11       Impact factor: 38.330

Review 3.  ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments.

Authors:  Michael J Buck; Jason D Lieb
Journal:  Genomics       Date:  2004-03       Impact factor: 5.736

4.  A massive snowball of fraud and deceit.

Authors:  Susan Kerr Bernal
Journal:  J Androl       Date:  2006-02-10

5.  Descriptive science.

Authors:  Arturo Casadevall; Ferric C Fang
Journal:  Infect Immun       Date:  2008-07-14       Impact factor: 3.441

Review 6.  The stochastic nature of biochemical networks.

Authors:  Vahid Shahrezaei; Peter S Swain
Journal:  Curr Opin Biotechnol       Date:  2008-08-09       Impact factor: 9.740

7.  A brief history of the hypothesis.

Authors:  David J Glass; Ned Hall
Journal:  Cell       Date:  2008-08-08       Impact factor: 41.582

Review 8.  Uncertainty in the translation of preclinical experiments to clinical trials. Why do most phase III clinical trials fail?

Authors:  Pedro R Lowenstein; Maria G Castro
Journal:  Curr Gene Ther       Date:  2009-10       Impact factor: 4.391

9.  Yersinia pseudotuberculosis disseminates directly from a replicating bacterial pool in the intestine.

Authors:  Penelope D Barnes; Molly A Bergman; Joan Mecsas; Ralph R Isberg
Journal:  J Exp Med       Date:  2006-06-05       Impact factor: 14.307

10.  Why most published research findings are false.

Authors:  John P A Ioannidis
Journal:  PLoS Med       Date:  2005-08-30       Impact factor: 11.613
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  38 in total

1.  Retracted science and the retraction index.

Authors:  Ferric C Fang; Arturo Casadevall
Journal:  Infect Immun       Date:  2011-08-08       Impact factor: 3.441

2.  A scalable method for molecular network reconstruction identifies properties of targets and mutations in acute myeloid leukemia.

Authors:  Edison Ong; Anthony Szedlak; Yunyi Kang; Peyton Smith; Nicholas Smith; Madison McBride; Darren Finlay; Kristiina Vuori; James Mason; Edward D Ball; Carlo Piermarocchi; Giovanni Paternostro
Journal:  J Comput Biol       Date:  2015-04       Impact factor: 1.479

3.  Comment on: "Desideratum for evidence-based epidemiology".

Authors:  Sean Hennessy; Charles E Leonard
Journal:  Drug Saf       Date:  2015-01       Impact factor: 5.606

4.  The 300 most cited articles published in periodontology.

Authors:  Clovis Mariano Faggion; Lilian Málaga; Alberto Monje; Anna-Lena Trescher; Stefan Listl; Marco Antonio Alarcón
Journal:  Clin Oral Investig       Date:  2016-11-14       Impact factor: 3.573

Review 5.  The oxidative stress theory of disease: levels of evidence and epistemological aspects.

Authors:  Pietro Ghezzi; Vincent Jaquet; Fabrizio Marcucci; Harald H H W Schmidt
Journal:  Br J Pharmacol       Date:  2016-08-04       Impact factor: 8.739

6.  Addressing Reproducibility in Cryopreservation, and Considerations Necessary for Commercialization and Community Development in Support of Genetic Resources of Aquatic Species.

Authors:  Leticia Torres; Terrence R Tiersch
Journal:  J World Aquac Soc       Date:  2018-06-28       Impact factor: 2.512

7.  Identification of Low-Level Vancomycin Resistance in Staphylococcus aureus in the Era of Informatics.

Authors:  Bradley A Ford
Journal:  J Clin Microbiol       Date:  2016-02-10       Impact factor: 5.948

Review 8.  Best Practices for Making Reproducible Biochemical Models.

Authors:  Veronica L Porubsky; Arthur P Goldberg; Anand K Rampadarath; David P Nickerson; Jonathan R Karr; Herbert M Sauro
Journal:  Cell Syst       Date:  2020-08-26       Impact factor: 10.304

9.  A new animal diet based on human Western diet is a robust diet-induced obesity model: comparison to high-fat and cafeteria diets in term of metabolic and gut microbiota disruption.

Authors:  R C Bortolin; A R Vargas; J Gasparotto; P R Chaves; C E Schnorr; Kd B Martinello; A K Silveira; T K Rabelo; D P Gelain; J C F Moreira
Journal:  Int J Obes (Lond)       Date:  2017-09-12       Impact factor: 5.095

10.  Reproducibility in Computational Neuroscience Models and Simulations.

Authors:  Robert A McDougal; Anna S Bulanova; William W Lytton
Journal:  IEEE Trans Biomed Eng       Date:  2016-03-08       Impact factor: 4.538
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