Literature DB >> 20866646

One-particle-thick, solvent-free, coarse-grained model for biological and biomimetic fluid membranes.

Hongyan Yuan1, Changjin Huang, Ju Li, George Lykotrafitis, Sulin Zhang.   

Abstract

Biological membranes are involved in numerous intriguing biophysical and biological cellular phenomena of different length scales, ranging from nanoscale raft formation, vesiculation, to microscale shape transformations. With extended length and time scales as compared to atomistic simulations, solvent-free coarse-grained membrane models have been exploited in mesoscopic membrane simulations. In this study, we present a one-particle-thick fluid membrane model, where each particle represents a cluster of lipid molecules. The model features an anisotropic interparticle pair potential with the interaction strength weighed by the relative particle orientations. With the anisotropic pair potential, particles can robustly self-assemble into fluid membranes with experimentally relevant bending rigidity. Despite its simple mathematical form, the model is highly tunable. Three potential parameters separately and effectively control diffusivity, bending rigidity, and spontaneous curvature of the model membrane. As demonstrated by selected examples, our model can naturally simulate dynamics of phase separation in multicomponent membranes and the topological change of fluid vesicles.

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Year:  2010        PMID: 20866646     DOI: 10.1103/PhysRevE.82.011905

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  23 in total

1.  Two-component coarse-grained molecular-dynamics model for the human erythrocyte membrane.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

2.  Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins.

Authors:  N Ramakrishnan; P B Sunil Kumar; Ravi Radhakrishnan
Journal:  Phys Rep       Date:  2014-10-01       Impact factor: 25.600

3.  Coarse-Grained Modeling of Pore Dynamics on the Red Blood Cell Membrane under Large Deformations.

Authors:  Meghdad Razizadeh; Mehdi Nikfar; Ratul Paul; Yaling Liu
Journal:  Biophys J       Date:  2020-06-24       Impact factor: 4.033

4.  Optimal multivalent targeting of membranes with many distinct receptors.

Authors:  Tine Curk; Jure Dobnikar; Daan Frenkel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

5.  Temperature- and rigidity-mediated rapid transport of lipid nanovesicles in hydrogels.

Authors:  Miaorong Yu; Wenyi Song; Falin Tian; Zhuo Dai; Quanlei Zhu; Ejaj Ahmad; Shiyan Guo; Chunliu Zhu; Haijun Zhong; Yongchun Yuan; Tao Zhang; Xin Yi; Xinghua Shi; Yong Gan; Huajian Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-05       Impact factor: 11.205

6.  Morphology transition in lipid vesicles due to in-plane order and topological defects.

Authors:  Linda S Hirst; Adam Ossowski; Matthew Fraser; Jun Geng; Jonathan V Selinger; Robin L B Selinger
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-11       Impact factor: 11.205

7.  Erythrocyte membrane model with explicit description of the lipid bilayer and the spectrin network.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

8.  Cytoskeleton Remodeling Induces Membrane Stiffness and Stability Changes of Maturing Reticulocytes.

Authors:  He Li; Jun Yang; Trang T Chu; Renugah Naidu; Lu Lu; Rajesh Chandramohanadas; Ming Dao; George Em Karniadakis
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

9.  Microphysical derivation of the Canham-Helfrich free-energy density.

Authors:  Brian Seguin; Eliot Fried
Journal:  J Math Biol       Date:  2013-02-07       Impact factor: 2.259

Review 10.  Physical Principles of Nanoparticle Cellular Endocytosis.

Authors:  Sulin Zhang; Huajian Gao; Gang Bao
Journal:  ACS Nano       Date:  2015-08-21       Impact factor: 15.881

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