Literature DB >> 20857213

Complete mitochondrial DNA sequences of the Nile tilapia (Oreochromis niloticus) and Blue tilapia (Oreochromis aureus): genome characterization and phylogeny applications.

Anyuan He1, Yongju Luo, Hong Yang, Liping Liu, Sifa Li, Chenghui Wang.   

Abstract

Cichlid fishes have played an important role in evolutionary biology and aquaculture industry. Nile tilapia (Oreochromis niloticus), blue tilapia (Oreochromis aureus) and Mozambique tilapia (Oreochromis mossambicus), the useful models in studying evolutionary biology within Cichlid fishes, are also mainly cultured species in aquaculture with great economic importance. In this paper, the complete nucleotide sequence of the mitochondrial genome for O. niloticus and O. aureus were determined and phylogenetic analyses from mitochondrial protein-coding genes were conducted to explore their phylogenetic relationship within Cichlids. The mitogenome is 16,625 bp for O. niloticus and 16,628 bp for O. aureus, containing the same gene order and an identical number of genes or regions with the other Cichlid fishes, including 13 protein-coding genes, two rRNA genes, 22 tRNA genes and one putative control region. Phylogenetic analyses using three different computational algorithms (maximum parsimony, maximum likelihood and Bayesian method) show O. niloticus and O. mossambicus are closely related, and O. aureus has remotely phylogenetic relationship from above two fishes.

Entities:  

Mesh：

Substances：

Year:  2010        PMID： 20857213     DOI： 10.1007/s11033-010-0324-7

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN： 0301-4851            Impact factor:   2.316


  29 in total

1.  Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences.

Authors:  Masaki Miya; Hirohiko Takeshima; Hiromitsu Endo; Naoya B Ishiguro; Jun G Inoue; Takahiko Mukai; Takashi P Satoh; Motoomi Yamaguchi; Akira Kawaguchi; Kohji Mabuchi; Shigeru M Shirai; Mutsumi Nishida
Journal:  Mol Phylogenet Evol       Date:  2003-01       Impact factor: 4.286

2.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

3.  Molecular phylogeny and biogeography of the Neotropical cichlid fish tribe Cichlasomatini (Teleostei: Cichlidae: Cichlasomatinae).

Authors:  Zuzana Musilová; Oldrich Rícan; Karel Janko; Jindrich Novák
Journal:  Mol Phylogenet Evol       Date:  2007-10-22       Impact factor: 4.286

4.  Complete mitochondrial genome of the bullhead torrent catfish, Liobagrus obesus (Siluriformes, Amblycipididae): Genome description and phylogenetic considerations inferred from the Cyt b and 16S rRNA genes.

Authors:  Yuri P Kartavtsev; Sang-Oun Jung; Young-Mi Lee; Hwa-Kun Byeon; Jae-Seong Lee
Journal:  Gene       Date:  2007-02-12       Impact factor: 3.688

Review 5.  African cichlid fish: a model system in adaptive radiation research.

Authors:  Ole Seehausen
Journal:  Proc Biol Sci       Date:  2006-08-22       Impact factor: 5.349

Review 6.  The species flocks of East African cichlid fishes: recent advances in molecular phylogenetics and population genetics.

Authors:  Walter Salzburger; Axel Meyer
Journal:  Naturwissenschaften       Date:  2004-04-20

7.  Complete mitochondrial genome of the grass carp (Ctenopharyngodon idella, Teleostei): insight into its phylogenic position within Cyprinidae.

Authors:  Chenghui Wang; Qin Chen; Guoqing Lu; Jiawei Xu; Qinling Yang; Sifa Li
Journal:  Gene       Date:  2008-07-18       Impact factor: 3.688

8.  Structure and evolution of teleost mitochondrial control regions.

Authors:  W J Lee; J Conroy; W H Howell; T D Kocher
Journal:  J Mol Evol       Date:  1995-07       Impact factor: 2.395

9.  Complete DNA sequences of the mitochondrial genomes of the pathogenic yeasts Candida orthopsilosis and Candida metapsilosis: insight into the evolution of linear DNA genomes from mitochondrial telomere mutants.

Authors:  Peter Kosa; Matus Valach; Lubomir Tomaska; Kenneth H Wolfe; Jozef Nosek
Journal:  Nucleic Acids Res       Date:  2006-05-09       Impact factor: 16.971

10.  The complete mitochondrial genome of a basal teleost, the Asian arowana (Scleropages formosus, Osteoglossidae).

Authors:  Gen Hua Yue; Woei Chang Liew; Laszlo Orban
Journal:  BMC Genomics       Date:  2006-09-21       Impact factor: 3.969
View more
  16 in total

1.  Genetic divergence in wild population of Labeo rohita (Hamilton, 1822) from nine Indian rivers, analyzed through MtDNA cytochrome b region.

Authors:  Rupesh K Luhariya; Kuldeep K Lal; Rajeev K Singh; Vindhya Mohindra; Peyush Punia; U K Chauhan; Arti Gupta; W S Lakra
Journal:  Mol Biol Rep       Date:  2011-07-07       Impact factor: 2.316

2.  Complete mitochondrial genome from South American catfish Pseudoplatystoma reticulatum (Eigenmann & Eigenmann) and its impact in Siluriformes phylogenetic tree.

Authors:  Luciana Cristine Vasques Villela; Anderson Luis Alves; Eduardo Sousa Varela; Michel Eduardo Beleza Yamagishi; Poliana Fernanda Giachetto; Naiara Milagres Augusto da Silva; Josi Margarete Ponzetto; Samuel Rezende Paiva; Alexandre Rodrigues Caetano
Journal:  Genetica       Date:  2017-02-03       Impact factor: 1.082

3.  Complete mitogenome sequence of black carp (Mylopharyngodon piceus) and its use for molecular phylogeny of leuciscine fishes.

Authors:  Chenghui Wang; Jun Wang; Jinquan Yang; Guoqing Lu; Xiao Song; Qin Chen; Jiawei Xu; Qinling Yang; Sifa Li
Journal:  Mol Biol Rep       Date:  2012-02-18       Impact factor: 2.316

4.  Molecular cloning of vasa gene and the effects of LHRH-A on its expression in blue tilapia Oreochromis aureus.

Authors:  Jun Xiao; Yongju Luo; Libing Chen; Li Yang; Yulin Huang; Zhongbao Guo; Enyan Guo; Zhanyang Tang; Ming Zhang; Xi Gan
Journal:  Fish Physiol Biochem       Date:  2012-12-07       Impact factor: 2.794

5.  Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes.

Authors:  Christoph Fischer; Stephan Koblmüller; Christian Gülly; Christian Schlötterer; Christian Sturmbauer; Gerhard G Thallinger
Journal:  PLoS One       Date:  2013-06-24       Impact factor: 3.240

6.  Behaviours associated with acoustic communication in Nile tilapia (Oreochromis niloticus).

Authors:  Nicolas Longrie; Pascal Poncin; Mathieu Denoël; Vincent Gennotte; Johann Delcourt; Eric Parmentier
Journal:  PLoS One       Date:  2013-04-19       Impact factor: 3.240

7.  Assembly and variation analyses of Clarias batrachus mitogenome retrieved from WGS data and its phylogenetic relationship with other catfishes.

Authors:  Basdeo Kushwaha; Ravindra Kumar; Suyash Agarwal; Manmohan Pandey; N S Nagpure; Mahender Singh; Shreya Srivastava; C G Joshi; P Das; L Sahoo; P Jayasankar; P K Meher; T M Shah; A B Patel; Namrata Patel; P Koringa; Sofia Priyadarsani Das; Siddhi Patnaik; Amrita Bit; M A Iquebal; Dinesh Kumar; J K Jena
Journal:  Meta Gene       Date:  2015-06-17

8.  The complete mitochondrial genome of Aspiorhynchus laticeps and its phylogenetic analysis.

Authors:  Ming Jiang; Changgeng Yang; Hua Wen
Journal:  Meta Gene       Date:  2014-02-20

9.  Infection of Tilapia tilapinevirus in Mozambique Tilapia (Oreochromis mossambicus), a Globally Vulnerable Fish Species.

Authors:  Pitchaporn Waiyamitra; Chutchai Piewbang; Somporn Techangamsuwan; Woei Chang Liew; Win Surachetpong
Journal:  Viruses       Date:  2021-06-09       Impact factor: 5.048

10.  Comparative analysis of mitochondrial genomes in distinct nuclear ploidy loach Misgurnus anguillicaudatus and its implications for polyploidy evolution.

Authors:  Xiaoyun Zhou; Yongyao Yu; Yanhe Li; Junjie Wu; Xiujie Zhang; Xianwu Guo; Weimin Wang
Journal:  PLoS One       Date:  2014-03-18       Impact factor: 3.240
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.