Literature DB >> 20852721

Selective and Stable DNA Base Pairing without Hydrogen Bonds.

Tracy J Matray1, Eric T Kool.   

Abstract

Entities:  

Year:  1998        PMID： 20852721      PMCID： PMC2939750          DOI： 10.1021/ja9803310

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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  27 in total

1.  Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin.

Authors:  J SantaLucia; R Kierzek; D H Turner
Journal:  Science       Date:  1992-04-10       Impact factor: 47.728

2.  Experimental Measurement of Aromatic Stacking Affinities in the Context of Duplex DNA.

Authors:  Kevin M Guckian; Barbara A Schweitzer; Rex X-F Ren; Charles J Sheils; Pamela L Paris; Deborah C Tahmassebi; Eric T Kool
Journal:  J Am Chem Soc       Date:  1996-08-28       Impact factor: 15.419

3.  C-Nucleosides Derived from Simple Aromatic Hydrocarbons.

Authors:  Narayan C Chaudhuri; Rex X-F Ren; Eric T Kool
Journal:  Synlett       Date:  1997-04-01       Impact factor: 2.454

4.  Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases.

Authors:  M Takeshita; C N Chang; F Johnson; S Will; A P Grollman
Journal:  J Biol Chem       Date:  1987-07-25       Impact factor: 5.157

5.  Predicting DNA duplex stability from the base sequence.

Authors:  K J Breslauer; R Frank; H Blöcker; L A Marky
Journal:  Proc Natl Acad Sci U S A       Date:  1986-06       Impact factor: 11.205

6.  Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids.

Authors:  S M Freier; N Sugimoto; A Sinclair; D Alkema; T Neilson; R Kierzek; M H Caruthers; D H Turner
Journal:  Biochemistry       Date:  1986-06-03       Impact factor: 3.162

7.  Influence of dangling thymidine residues on the stability and structure of two DNA duplexes.

Authors:  M Senior; R A Jones; K J Breslauer
Journal:  Biochemistry       Date:  1988-05-17       Impact factor: 3.162

8.  A thymidine triphosphate shape analog lacking Watson-Crick pairing ability is replicated with high sequence selectivity.

Authors:  S Moran; R X Ren; E T Kool
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-30       Impact factor: 11.205

9.  Hydrophobic, Non-Hydrogen-Bonding Bases and Base Pairs in DNA.

Authors:  Barbara A Schweitzer; Eric T Kool
Journal:  J Am Chem Soc       Date:  1995-02-22       Impact factor: 15.419

10.  Influence of abasic and anucleosidic sites on the stability, conformation, and melting behavior of a DNA duplex: correlations of thermodynamic and structural data.

Authors:  G Vesnaver; C N Chang; M Eisenberg; A P Grollman; K J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  1989-05       Impact factor: 11.205
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  33 in total

1.  Misincorporation of 2'-deoxyoxanosine into DNA: a molecular basis for NO-induced mutagenesis derived from theoretical calculations.

Authors:  B Hernández; R Soliva; F J Luque; M Orozco
Journal:  Nucleic Acids Res       Date:  2000-12-15       Impact factor: 16.971

2.  NMR structure of a DNA duplex containing nucleoside analog 1-(2'-deoxy-beta-D-ribofuranosyl)-3-nitropyrrole and the structure of the unmodified control.

Authors:  D A Klewer; A Hoskins; P Zhang; V J Davisson; D E Bergstrom; A C LiWang
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971

Review 3.  Survey and summary: The applications of universal DNA base analogues.

Authors:  D Loakes
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

4.  Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites.

Authors:  Serge Smirnov; Tracy J Matray; Eric T Kool; Carlos de los Santos
Journal:  Nucleic Acids Res       Date:  2002-12-15       Impact factor: 16.971

5.  Effect of lesions on the dynamics of DNA on the picosecond and nanosecond timescales using a polarity sensitive probe.

Authors:  Mark M Somoza; Daniele Andreatta; Catherine J Murphy; Robert S Coleman; Mark A Berg
Journal:  Nucleic Acids Res       Date:  2004-05-06       Impact factor: 16.971

6.  Toward a designed, functioning genetic system with expanded-size base pairs: solution structure of the eight-base xDNA double helix.

Authors:  Stephen R Lynch; Haibo Liu; Jianmin Gao; Eric T Kool
Journal:  J Am Chem Soc       Date:  2006-11-15       Impact factor: 15.419

7.  Polymerase amplification, cloning, and gene expression of benzo-homologous "yDNA" base pairs.

Authors:  Jijumon Chelliserrykattil; Haige Lu; Alex H F Lee; Eric T Kool
Journal:  Chembiochem       Date:  2008-12-15       Impact factor: 3.164

8.  A computational study of expanded heterocyclic nucleosides in DNA.

Authors:  Peter I O'Daniel; Malcolm Jefferson; Olaf Wiest; Katherine L Seley-Radtke
Journal:  J Biomol Struct Dyn       Date:  2008-12

9.  Novel Nucleoside Analogues with Fluorophores Replacing the DNA Base.

Authors:  Christoph Strässler; Newton E Davis; Eric T Kool
Journal:  Helv Chim Acta       Date:  1999-12-15       Impact factor: 2.164

10.  Steric and electrostatic effects at the C2 atom substituent influence replication and miscoding of the DNA deamination product deoxyxanthosine and analogs by DNA polymerases.

Authors:  Huidong Zhang; Urban Bren; Ivan D Kozekov; Carmelo J Rizzo; Donald F Stec; F Peter Guengerich
Journal:  J Mol Biol       Date:  2009-07-14       Impact factor: 5.469
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