Literature DB >> 11121478

Misincorporation of 2'-deoxyoxanosine into DNA: a molecular basis for NO-induced mutagenesis derived from theoretical calculations.

B Hernández1, R Soliva, F J Luque, M Orozco.   

Abstract

A wide range of theoretical methods, including high level ab initio, density functional, self-consistent reaction field, molecular dynamics and thermodynamic integration calculations, have been used to analyze the mutagenic properties of oxanosine. The major tautomeric forms in the gas phase and aqueous solution have been determined. The ability of oxanosine to recognize thymine and cytosine in the gas phase and in the DNA environment has been compared with that of guanine. A physicochemical explanation for the mutagenic properties of oxanosine is suggested.

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Year:  2000        PMID: 11121478      PMCID: PMC115229          DOI: 10.1093/nar/28.24.4873

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  28 in total

1.  Role of sugar re-puckering in the transition of A and B forms of DNA in solution. A molecular dynamics study.

Authors:  R Soliva; F J Luque; C Alhambra; M Orozco
Journal:  J Biomol Struct Dyn       Date:  1999-08

2.  Deglycosylation susceptibility and base-pairing stability of 2'-deoxyoxanosine in oligodeoxynucleotide.

Authors:  T Suzuki; Y Matsumura; H Ide; K Kanaori; K Tajima; K Makino
Journal:  Biochemistry       Date:  1997-07-01       Impact factor: 3.162

3.  The B-DNA dodecamer at high resolution reveals a spine of water on sodium.

Authors:  X Shui; L McFail-Isom; G G Hu; L D Williams
Journal:  Biochemistry       Date:  1998-06-09       Impact factor: 3.162

4.  The structure of guanosine-thymidine mismatches in B-DNA at 2.5-A resolution.

Authors:  W N Hunter; T Brown; G Kneale; N N Anand; D Rabinovich; O Kennard
Journal:  J Biol Chem       Date:  1987-07-25       Impact factor: 5.157

5.  A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat.

Authors:  T E Cheatham; P Cieplak; P A Kollman
Journal:  J Biomol Struct Dyn       Date:  1999-02

6.  The X-ray structure determination of oxanosine.

Authors:  H Nakamura; N Yagisawa; N Shimada; T Takita; H Umezawa; Y Iitaka
Journal:  J Antibiot (Tokyo)       Date:  1981-09       Impact factor: 2.649

7.  A thymidine triphosphate shape analog lacking Watson-Crick pairing ability is replicated with high sequence selectivity.

Authors:  S Moran; R X Ren; E T Kool
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-30       Impact factor: 11.205

8.  Hydrophobic, Non-Hydrogen-Bonding Bases and Base Pairs in DNA.

Authors:  Barbara A Schweitzer; Eric T Kool
Journal:  J Am Chem Soc       Date:  1995-02-22       Impact factor: 15.419

9.  Structure and Base Pairing Properties of a Replicable Nonpolar Isostere for Deoxyadenosine.

Authors:  Kevin M Guckian; Juan C Morales; Eric T Kool
Journal:  J Org Chem       Date:  1998       Impact factor: 4.354

10.  DNA deaminating ability and genotoxicity of nitric oxide and its progenitors.

Authors:  D A Wink; K S Kasprzak; C M Maragos; R K Elespuru; M Misra; T M Dunams; T A Cebula; W H Koch; A W Andrews; J S Allen
Journal:  Science       Date:  1991-11-15       Impact factor: 47.728

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  6 in total

1.  The effect of amino groups on the stability of DNA duplexes and triplexes based on purines derived from inosine.

Authors:  E Cubero; R Güimil-García; F J Luque; R Eritja; M Orozco
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  Cleavage of deoxyoxanosine-containing oligodeoxyribonucleotides by bacterial endonuclease V.

Authors:  Thomas M Hitchcock; Honghai Gao; Weiguo Cao
Journal:  Nucleic Acids Res       Date:  2004-08-02       Impact factor: 16.971

3.  Predicting the effects of basepair mutations in DNA-protein complexes by thermodynamic integration.

Authors:  Frank R Beierlein; G Geoff Kneale; Timothy Clark
Journal:  Biophys J       Date:  2011-09-07       Impact factor: 4.033

4.  Solution structure and stability of the DNA undecamer duplexes containing oxanine mismatch.

Authors:  Seung Pil Pack; Hirohisa Morimoto; Keisuke Makino; Kunihiko Tajima; Kenji Kanaori
Journal:  Nucleic Acids Res       Date:  2011-10-27       Impact factor: 16.971

5.  Chemical synthesis and thermodynamic characterization of oxanine-containing oligodeoxynucleotides.

Authors:  Seung Pil Pack; Mitsuru Nonogawa; Tsutomu Kodaki; Keisuke Makino
Journal:  Nucleic Acids Res       Date:  2005-10-11       Impact factor: 16.971

6.  Direct immobilization of DNA oligomers onto the amine-functionalized glass surface for DNA microarray fabrication through the activation-free reaction of oxanine.

Authors:  Seung Pil Pack; Nagendra Kumar Kamisetty; Mitsuru Nonogawa; Kamakshaiah Charyulu Devarayapalli; Kairi Ohtani; Kazunari Yamada; Yasuko Yoshida; Tsutomu Kodaki; Keisuke Makino
Journal:  Nucleic Acids Res       Date:  2007-08-21       Impact factor: 16.971

  6 in total

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