Literature DB >> 20851897

Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T.

James G Elkins1, Adriane Lochner, Scott D Hamilton-Brehm, Karen Walston Davenport, Mircea Podar, Steven D Brown, Miriam L Land, Loren J Hauser, Dawn M Klingeman, Babu Raman, Lynne A Goodwin, Roxanne Tapia, Linda J Meincke, J Chris Detter, David C Bruce, Cliff S Han, Anthony V Palumbo, Robert W Cottingham, Martin Keller, David E Graham.   

Abstract

Caldicellulosiruptor obsidiansis OB47(T) (ATCC BAA-2073, JCM 16842) is an extremely thermophilic, anaerobic bacterium capable of hydrolyzing plant-derived polymers through the expression of multidomain/multifunctional hydrolases. The complete genome sequence reveals a diverse set of carbohydrate-active enzymes and provides further insight into lignocellulosic biomass hydrolysis at high temperatures.

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Year:  2010        PMID： 20851897      PMCID： PMC2976464          DOI： 10.1128/JB.00950-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Solexa Ltd.

Authors:  Simon Bennett
Journal:  Pharmacogenomics       Date:  2004-06       Impact factor: 2.533

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

7.  Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Yellowstone National Park.

Authors:  Scott D Hamilton-Brehm; Jennifer J Mosher; Tatiana Vishnivetskaya; Mircea Podar; Sue Carroll; Steve Allman; Tommy J Phelps; Martin Keller; James G Elkins
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

8.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169
  8 in total
  25 in total

1.  Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

Authors:  Steven D Brown; Dawn M Klingeman; Tse-Yuan S Lu; Courtney M Johnson; Sagar M Utturkar; Miriam L Land; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

2.  Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass.

Authors:  Sara E Blumer-Schuette; Richard J Giannone; Jeffrey V Zurawski; Inci Ozdemir; Qin Ma; Yanbin Yin; Ying Xu; Irina Kataeva; Farris L Poole; Michael W W Adams; Scott D Hamilton-Brehm; James G Elkins; Frank W Larimer; Miriam L Land; Loren J Hauser; Robert W Cottingham; Robert L Hettich; Robert M Kelly
Journal:  J Bacteriol       Date:  2012-05-25       Impact factor: 3.490

3.  Use of label-free quantitative proteomics to distinguish the secreted cellulolytic systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis.

Authors:  Adriane Lochner; Richard J Giannone; Miguel Rodriguez; Manesh B Shah; Jonathan R Mielenz; Martin Keller; Garabed Antranikian; David E Graham; Robert L Hettich
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

4.  Genome sequence of the mercury-methylating and pleomorphic Desulfovibrio africanus Strain Walvis Bay.

Authors:  Steven D Brown; Judy D Wall; Amy M Kucken; Cynthia C Gilmour; Mircea Podar; Craig C Brandt; Hazuki Teshima; John C Detter; Cliff S Han; Miriam L Land; Susan Lucas; James Han; Len Pennacchio; Matt Nolan; Sam Pitluck; Tanja Woyke; Lynne Goodwin; Anthony V Palumbo; Dwayne A Elias
Journal:  J Bacteriol       Date:  2011-06-03       Impact factor: 3.490

5.  Improved growth media and culture techniques for genetic analysis and assessment of biomass utilization by Caldicellulosiruptor bescii.

Authors:  Joel Farkas; Daehwan Chung; Minseok Cha; Jennifer Copeland; Philip Grayeski; Janet Westpheling
Journal:  J Ind Microbiol Biotechnol       Date:  2012-11-13       Impact factor: 3.346

6.  Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities.

Authors:  Joel E Kostka; Stefan J Green; Lavanya Rishishwar; Om Prakash; Lee S Katz; Leonardo Mariño-Ramírez; I King Jordan; Christine Munk; Natalia Ivanova; Natalia Mikhailova; David B Watson; Steven D Brown; Anthony V Palumbo; Scott C Brooks
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

7.  Complete genome sequence of the haloalkaliphilic, hydrogen-producing bacterium Halanaerobium hydrogeniformans.

Authors:  Steven D Brown; Matthew B Begemann; Melanie R Mormile; Judy D Wall; Cliff S Han; Lynne A Goodwin; Samuel Pitluck; Miriam L Land; Loren J Hauser; Dwayne A Elias
Journal:  J Bacteriol       Date:  2011-05-20       Impact factor: 3.490

8.  Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132.

Authors:  Steven D Brown; Cynthia C Gilmour; Amy M Kucken; Judy D Wall; Dwayne A Elias; Craig C Brandt; Mircea Podar; Olga Chertkov; Brittany Held; David C Bruce; John C Detter; Roxanne Tapia; Cliff S Han; Lynne A Goodwin; Jan-Fang Cheng; Samuel Pitluck; Tanja Woyke; Natalia Mikhailova; Natalia N Ivanova; James Han; Susan Lucas; Alla L Lapidus; Miriam L Land; Loren J Hauser; Anthony V Palumbo
Journal:  J Bacteriol       Date:  2011-02-25       Impact factor: 3.490

9.  Comparative Analysis of Extremely Thermophilic Caldicellulosiruptor Species Reveals Common and Unique Cellular Strategies for Plant Biomass Utilization.

Authors:  Jeffrey V Zurawski; Jonathan M Conway; Laura L Lee; Hunter J Simpson; Javier A Izquierdo; Sara Blumer-Schuette; Intawat Nookaew; Michael W W Adams; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2015-08-07       Impact factor: 4.792

10.  Detection of a novel active transposable element in Caldicellulosiruptor hydrothermalis and a new search for elements in this genus.

Authors:  Daehwan Chung; Joel Farkas; Janet Westpheling
Journal:  J Ind Microbiol Biotechnol       Date:  2013-03-10       Impact factor: 3.346
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