Literature DB >> 20849807

Selection of reference genes for gene expression studies in astrocytomas.

Sylwia M Gresner1, Ewa Golanska, Dominika Kulczycka-Wojdala, Dariusz J Jaskolski, Wielislaw Papierz, Pawel P Liberski.   

Abstract

This study was aimed to test a panel of six housekeeping genes (GAPDH, HPRT1, POLR2A, RPLP0, ACTB, and H3F) so as to identify and validate the most suitable reference genes for expression studies in astrocytomas. GAPDH was the most stable and HPRT1 was the least stable reference gene. The effect of reference gene selection on quantitative real-time polymerase chain reaction data interpretation was demonstrated, normalizing the expression data of a selected gene of interest. Thus, GAPDH may be recommended for data normalization in gene expression studies in astrocytomas. Nevertheless, a preliminary validation of reference gene stability is required prior to every study.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20849807     DOI: 10.1016/j.ab.2010.09.010

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  6 in total

1.  Comparison of Reference Genes for Transcriptional Studies in Postmortem Human Brain Tissue Under Different Conditions.

Authors:  Qing Zhang; Hanlin Zhang; Fan Liu; Qian Yang; Kang Chen; Pan Liu; Tianyi Sun; Chao Ma; Wenying Qiu; Xiaojing Qian
Journal:  Neurosci Bull       Date:  2018-11-07       Impact factor: 5.203

2.  Selection of suitable reference genes for expression analysis in human glioma using RT-qPCR.

Authors:  Susanne Grube; Tatjana Göttig; Diana Freitag; Christian Ewald; Rolf Kalff; Jan Walter
Journal:  J Neurooncol       Date:  2015-04-11       Impact factor: 4.130

3.  Guidelines for the Optimization and Validation of In Situ Hybridization.

Authors:  Julia Jones; William J Howat
Journal:  Methods Mol Biol       Date:  2020

4.  Identification of suitable reference genes for real-time PCR analysis of statin-treated human umbilical vein endothelial cells.

Authors:  Barbara Żyżyńska-Granica; Katarzyna Koziak
Journal:  PLoS One       Date:  2012-12-10       Impact factor: 3.240

5.  Identification of a suitable qPCR reference gene in metastatic clear cell renal cell carcinoma.

Authors:  Piotr M Wierzbicki; Jakub Klacz; Agnieszka Rybarczyk; Tomasz Slebioda; Marcin Stanislawowski; Agata Wronska; Anna Kowalczyk; Marcin Matuszewski; Zbigniew Kmiec
Journal:  Tumour Biol       Date:  2014-09-16

6.  ACTB and SDHA Are Suitable Endogenous Reference Genes for Gene Expression Studies in Human Astrocytomas Using Quantitative RT-PCR.

Authors:  Gabriele Röhn; Arend Koch; Boris Krischek; Pantelis Stavrinou; Roland Goldbrunner; Marco Timmer
Journal:  Technol Cancer Res Treat       Date:  2018-01-01
  6 in total

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