Literature DB >> 20848247

Fishing for the hidden peptidome in health and disease (drug abuse).

Lloyd D Fricker1, Jonathan V Sweedler.   

Abstract

The proteome and peptidome are defined as the set of proteins and peptides present in a tissue or other biological sample. In most proteomic studies, only abundant proteins are detected and, although these are important molecules, they are often well-studied structural proteins. A number of approaches have been used to examine less abundant molecules that play roles in signaling or otherwise have regulatory functions, including peptides as well as proteins such as enzymes and receptors. The overarching goals of this special issue involve defining the peptidome, identifying the current state of the field, and discussing methods to characterize the peptides, their receptors, and future needs for such measurements.

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Year:  2010        PMID: 20848247      PMCID: PMC2976998          DOI: 10.1208/s12248-010-9228-7

Source DB:  PubMed          Journal:  AAPS J        ISSN: 1550-7416            Impact factor:   4.009


  22 in total

Review 1.  Proteolytic processing in the secretory pathway.

Authors:  A Zhou; G Webb; X Zhu; D F Steiner
Journal:  J Biol Chem       Date:  1999-07-23       Impact factor: 5.157

Review 2.  Mass spectrometry-based proteomics.

Authors:  Ruedi Aebersold; Matthias Mann
Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

3.  Peptide diffusion, protection, and degradation in nuclear and cytoplasmic compartments before antigen presentation by MHC class I.

Authors:  Eric Reits; Alexander Griekspoor; Joost Neijssen; Tom Groothuis; Kees Jalink; Peter van Veelen; Hans Janssen; Jero Calafat; Jan Wouter Drijfhout; Jacques Neefjes
Journal:  Immunity       Date:  2003-01       Impact factor: 31.745

Review 4.  Regulation of notch signaling activity.

Authors:  François Schweisguth
Journal:  Curr Biol       Date:  2004-02-03       Impact factor: 10.834

5.  Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

Authors:  William M Old; Karen Meyer-Arendt; Lauren Aveline-Wolf; Kevin G Pierce; Alex Mendoza; Joel R Sevinsky; Katheryn A Resing; Natalie G Ahn
Journal:  Mol Cell Proteomics       Date:  2005-06-23       Impact factor: 5.911

Review 6.  Discovering new invertebrate neuropeptides using mass spectrometry.

Authors:  Amanda B Hummon; Andinet Amare; Jonathan V Sweedler
Journal:  Mass Spectrom Rev       Date:  2006 Jan-Feb       Impact factor: 10.946

Review 7.  Peptidomics: identification and quantification of endogenous peptides in neuroendocrine tissues.

Authors:  Lloyd D Fricker; Jihyeon Lim; Hui Pan; Fa-Yun Che
Journal:  Mass Spectrom Rev       Date:  2006 Mar-Apr       Impact factor: 10.946

8.  Saccharomyces cerevisiae a-factor mutants reveal residues critical for processing, activity, and export.

Authors:  Gregory Huyer; Amy Kistler; Franklin J Nouvet; Carolyn M George; Meredith L Boyle; Susan Michaelis
Journal:  Eukaryot Cell       Date:  2006-09

9.  The exception that reinforces the rule: crosspriming by cytosolic peptides that escape degradation.

Authors:  Avital Lev; Kazuyo Takeda; Damien Zanker; Jason C Maynard; Peniel Dimberu; Elizabeth Waffarn; James Gibbs; Nir Netzer; Michael F Princiotta; Len Neckers; Didier Picard; Christopher V Nicchitta; Weisan Chen; Yoram Reiter; Jack R Bennink; Jonathan W Yewdell
Journal:  Immunity       Date:  2008-06       Impact factor: 31.745

10.  Mass spectrometry-based discovery of circadian peptides.

Authors:  Nathan G Hatcher; Norman Atkins; Suresh P Annangudi; Andrew J Forbes; Neil L Kelleher; Martha U Gillette; Jonathan V Sweedler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-21       Impact factor: 11.205

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  2 in total

Review 1.  Recent advances in quantitative neuroproteomics.

Authors:  George E Craft; Anshu Chen; Angus C Nairn
Journal:  Methods       Date:  2013-04-25       Impact factor: 3.608

2.  Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus.

Authors:  Ji Eun Lee; Leonid Zamdborg; Bruce R Southey; Norman Atkins; Jennifer W Mitchell; Mingxi Li; Martha U Gillette; Neil L Kelleher; Jonathan V Sweedler
Journal:  J Proteome Res       Date:  2013-01-11       Impact factor: 4.466

  2 in total

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