Literature DB >> 20841778

Combining relevance assignment with quality of the evidence to support guideline development.

Marcelo Fiszman1, Bruce E Bray, Dongwook Shin, Halil Kilicoglu, Glen C Bennett, Olivier Bodenreider, Thomas C Rindflesch.   

Abstract

Clinical practice guidelines are used to disseminate best practice to clinicians. Successful guidelines depend on literature that is both relevant to the questions posed and based on high quality research in accordance with evidence-based medicine. Meeting these standards requires extensive manual review. We describe a system that combines symbolic semantic processing with a statistical method for selecting both relevant and high quality studies. We focused on a cardiovascular risk factor guideline, and the overall performance of the system was 56% recall, 91% precision (F0.5-score 0.81). If quality of the evidence is not taken into account, performance drops to 62% recall, 79% precision (F0.5-score 0.75). We suggest that this system can potentially improve the efficiency of the literature review process in guideline development.

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Year:  2010        PMID: 20841778      PMCID: PMC4296513     

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  15 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text.

Authors:  Thomas C Rindflesch; Marcelo Fiszman
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

3.  The Unified Medical Language System (UMLS): integrating biomedical terminology.

Authors:  Olivier Bodenreider
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  Developing optimal search strategies for detecting clinically relevant qualitative studies in MEDLINE.

Authors:  Sharon S-L Wong; Nancy L Wilczynski; R Brian Haynes
Journal:  Stud Health Technol Inform       Date:  2004

5.  Text categorization models for high-quality article retrieval in internal medicine.

Authors:  Yindalon Aphinyanaphongs; Ioannis Tsamardinos; Alexander Statnikov; Douglas Hardin; Constantin F Aliferis
Journal:  J Am Med Inform Assoc       Date:  2004-11-23       Impact factor: 4.497

6.  Using outcome polarity in sentence extraction for medical question-answering.

Authors:  Yun Niu; Xiaodan Zhu; Graeme Hirst
Journal:  AMIA Annu Symp Proc       Date:  2006

7.  Towards automatic recognition of scientifically rigorous clinical research evidence.

Authors:  Halil Kilicoglu; Dina Demner-Fushman; Thomas C Rindflesch; Nancy L Wilczynski; R Brian Haynes
Journal:  J Am Med Inform Assoc       Date:  2008-10-24       Impact factor: 4.497

8.  Semantic processing to support clinical guideline development.

Authors:  Marcelo Fiszman; Eduardo Ortiz; Bruce E Bray; Thomas C Rindflesch
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

9.  Developing optimal search strategies for detecting clinically sound studies in MEDLINE.

Authors:  R B Haynes; N Wilczynski; K A McKibbon; C J Walker; J C Sinclair
Journal:  J Am Med Inform Assoc       Date:  1994 Nov-Dec       Impact factor: 4.497

10.  Utilization of the PICO framework to improve searching PubMed for clinical questions.

Authors:  Connie Schardt; Martha B Adams; Thomas Owens; Sheri Keitz; Paul Fontelo
Journal:  BMC Med Inform Decis Mak       Date:  2007-06-15       Impact factor: 2.796

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  6 in total

1.  A new iterative method to reduce workload in systematic review process.

Authors:  Siddhartha Jonnalagadda; Diana Petitti
Journal:  Int J Comput Biol Drug Des       Date:  2013-02-21

2.  Using Machine Learning and Natural Language Processing to Review and Classify the Medical Literature on Cancer Susceptibility Genes.

Authors:  Yujia Bao; Zhengyi Deng; Yan Wang; Heeyoon Kim; Victor Diego Armengol; Francisco Acevedo; Nofal Ouardaoui; Cathy Wang; Giovanni Parmigiani; Regina Barzilay; Danielle Braun; Kevin S Hughes
Journal:  JCO Clin Cancer Inform       Date:  2019-09

3.  Representing and extracting lung cancer study metadata: study objective and study design.

Authors:  Jean I Garcia-Gathright; Andrea Oh; Phillip A Abarca; Mary Han; William Sago; Marshall L Spiegel; Brian Wolf; Edward B Garon; Alex A T Bui; Denise R Aberle
Journal:  Comput Biol Med       Date:  2015-01-13       Impact factor: 4.589

4.  Automatically finding relevant citations for clinical guideline development.

Authors:  Duy Duc An Bui; Siddhartha Jonnalagadda; Guilherme Del Fiol
Journal:  J Biomed Inform       Date:  2015-09-10       Impact factor: 6.317

Review 5.  Using text mining for study identification in systematic reviews: a systematic review of current approaches.

Authors:  Alison O'Mara-Eves; James Thomas; John McNaught; Makoto Miwa; Sophia Ananiadou
Journal:  Syst Rev       Date:  2015-01-14

6.  Supporting systematic reviews using LDA-based document representations.

Authors:  Yuanhan Mo; Georgios Kontonatsios; Sophia Ananiadou
Journal:  Syst Rev       Date:  2015-11-26
  6 in total

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