Literature DB >> 18999127

Semantic processing to support clinical guideline development.

Marcelo Fiszman1, Eduardo Ortiz, Bruce E Bray, Thomas C Rindflesch.   

Abstract

Clinical practice guidelines are one of the main resources for communicating evidence-based practice to health professionals. During guideline development, questions that express a knowledge gap are answered by finding relevant citations in MEDLINE and other biomedical databases. Determining citation relevance involves extensive manual review. We propose an automated method for finding relevant citations based on guideline question classification, semantic processing, and rules that match question classes with semantic predications. In this initial study, we focused on a pediatric cardiovascular risk factor guideline. The overall performance of the system was 40% recall, 88% precision (F0.5-score 0.71), and 98% specificity. We show that relevant and nonrelevant citations have clinically different semantic characteristics and suggest that this method has the potential to improve the efficiency of the literature review process in guideline development.

Mesh:

Year:  2008        PMID: 18999127      PMCID: PMC2656081     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  14 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  A taxonomy of generic clinical questions: classification study.

Authors:  J W Ely; J A Osheroff; P N Gorman; M H Ebell; M L Chambliss; E A Pifer; P Z Stavri
Journal:  BMJ       Date:  2000-08-12

3.  The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text.

Authors:  Thomas C Rindflesch; Marcelo Fiszman
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

4.  A knowledge-acquisition wizard to encode guidelines.

Authors:  Ravi D Shankar; Samson W Tu; Mark A Musen
Journal:  AMIA Annu Symp Proc       Date:  2003

5.  Using outcome polarity in sentence extraction for medical question-answering.

Authors:  Yun Niu; Xiaodan Zhu; Graeme Hirst
Journal:  AMIA Annu Symp Proc       Date:  2006

6.  Evaluation of PICO as a knowledge representation for clinical questions.

Authors:  Xiaoli Huang; Jimmy Lin; Dina Demner-Fushman
Journal:  AMIA Annu Symp Proc       Date:  2006

7.  Extraction and use of linguistic patterns for modelling medical guidelines.

Authors:  Radu Serban; Annette ten Teije; Frank van Harmelen; Mar Marcos; Cristina Polo-Conde
Journal:  Artif Intell Med       Date:  2006-09-11       Impact factor: 5.326

8.  Knowledge-based methods to help clinicians find answers in MEDLINE.

Authors:  Charles A Sneiderman; Dina Demner-Fushman; Marcelo Fiszman; Nicholas C Ide; Thomas C Rindflesch
Journal:  J Am Med Inform Assoc       Date:  2007-08-21       Impact factor: 4.497

9.  Evaluation of SAPHIRE: an automated approach to indexing and retrieving medical literature.

Authors:  W Hersh; D H Hickam; R B Haynes; K A McKibbon
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1991

10.  Developing optimal search strategies for detecting clinically sound studies in MEDLINE.

Authors:  R B Haynes; N Wilczynski; K A McKibbon; C J Walker; J C Sinclair
Journal:  J Am Med Inform Assoc       Date:  1994 Nov-Dec       Impact factor: 4.497

View more
  9 in total

1.  Combining relevance assignment with quality of the evidence to support guideline development.

Authors:  Marcelo Fiszman; Bruce E Bray; Dongwook Shin; Halil Kilicoglu; Glen C Bennett; Olivier Bodenreider; Thomas C Rindflesch
Journal:  Stud Health Technol Inform       Date:  2010

2.  A new iterative method to reduce workload in systematic review process.

Authors:  Siddhartha Jonnalagadda; Diana Petitti
Journal:  Int J Comput Biol Drug Des       Date:  2013-02-21

3.  Applying semantic-based probabilistic context-free grammar to medical language processing--a preliminary study on parsing medication sentences.

Authors:  Hua Xu; Samir AbdelRahman; Yanxin Lu; Joshua C Denny; Son Doan
Journal:  J Biomed Inform       Date:  2011-08-12       Impact factor: 6.317

4.  Adapting Semantic Natural Language Processing Technology to Address Information Overload in Influenza Epidemic Management.

Authors:  Alla Keselman; Graciela Rosemblat; Halil Kilicoglu; Marcelo Fiszman; Honglan Jin; Dongwook Shin; Thomas C Rindflesch
Journal:  J Am Soc Inf Sci Technol       Date:  2010-12-01

5.  Automatically finding relevant citations for clinical guideline development.

Authors:  Duy Duc An Bui; Siddhartha Jonnalagadda; Guilherme Del Fiol
Journal:  J Biomed Inform       Date:  2015-09-10       Impact factor: 6.317

6.  Text summarization as a decision support aid.

Authors:  T Elizabeth Workman; Marcelo Fiszman; John F Hurdle
Journal:  BMC Med Inform Decis Mak       Date:  2012-05-23       Impact factor: 2.796

Review 7.  Using text mining for study identification in systematic reviews: a systematic review of current approaches.

Authors:  Alison O'Mara-Eves; James Thomas; John McNaught; Makoto Miwa; Sophia Ananiadou
Journal:  Syst Rev       Date:  2015-01-14

8.  Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury.

Authors:  Michael J Cairelli; Marcelo Fiszman; Han Zhang; Thomas C Rindflesch
Journal:  J Biomed Semantics       Date:  2015-05-18

9.  Broad-coverage biomedical relation extraction with SemRep.

Authors:  Halil Kilicoglu; Graciela Rosemblat; Marcelo Fiszman; Dongwook Shin
Journal:  BMC Bioinformatics       Date:  2020-05-14       Impact factor: 3.169

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.