Literature DB >> 20837514

Deletion of the Cel48S cellulase from Clostridium thermocellum.

Daniel G Olson1, Shital A Tripathi, Richard J Giannone, Jonathan Lo, Nicky C Caiazza, David A Hogsett, Robert L Hettich, Adam M Guss, Genia Dubrovsky, Lee R Lynd.   

Abstract

Clostridium thermocellum is a thermophilic anaerobic bacterium that rapidly solubilizes cellulose with the aid of a multienzyme cellulosome complex. Creation of knockout mutants for Cel48S (also known as CelS, S(S), and S8), the most abundant cellulosome subunit, was undertaken to gain insight into its role in enzymatic and microbial cellulose solubilization. Cultures of the Cel48S deletion mutant (S mutant) were able to completely solubilize 10 g/L crystalline cellulose. The cellulose hydrolysis rate of the S mutant strain was 60% lower than the parent strain, with the S mutant strain also exhibiting a 40% reduction in cell yield. The cellulosome produced by the S mutant strain was purified by affinity digestion, characterized enzymatically, and found to have a 35% lower specific activity on Avicel. The composition of the purified cellulosome was analyzed by tandem mass spectrometry with APEX quantification and no significant changes in abundance were observed in any of the major (>1% of cellulosomal protein) enzymatic subunits. Although most cellulolytic bacteria have one family 48 cellulase, C. thermocellum has two, Cel48S and Cel48Y. Cellulose solubilization by a Cel48S and Cel48Y double knockout was essentially the same as that of the Cel48S single knockout. Our results indicate that solubilization of crystalline cellulose by C. thermocellum can proceed to completion without expression of a family 48 cellulase.

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Year:  2010        PMID: 20837514      PMCID: PMC2955147          DOI: 10.1073/pnas.1003584107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

Review 1.  Cellulase, clostridia, and ethanol.

Authors:  Arnold L Demain; Michael Newcomb; J H David Wu
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

2.  Global view of the Clostridium thermocellum cellulosome revealed by quantitative proteomic analysis.

Authors:  Nicholas D Gold; Vincent J J Martin
Journal:  J Bacteriol       Date:  2007-07-20       Impact factor: 3.490

3.  Development of pyrF-based genetic system for targeted gene deletion in Clostridium thermocellum and creation of a pta mutant.

Authors:  Shital A Tripathi; Daniel G Olson; D Aaron Argyros; Bethany B Miller; Trisha F Barrett; Daniel M Murphy; Jesse D McCool; Anne K Warner; Vineet B Rajgarhia; Lee R Lynd; David A Hogsett; Nicky C Caiazza
Journal:  Appl Environ Microbiol       Date:  2010-08-06       Impact factor: 4.792

4.  Quantification of cell and cellulase mass concentrations during anaerobic cellulose fermentation: development of an enzyme-linked immunosorbent assay-based method with application to Clostridium thermocellum batch cultures.

Authors:  Yiheng Zhang; Lee R Lynd
Journal:  Anal Chem       Date:  2003-01-15       Impact factor: 6.986

5.  Electrotransformation of Clostridium thermocellum.

Authors:  Michael V Tyurin; Sunil G Desai; Lee R Lynd
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

6.  Cloning and DNA sequencing of the genes encoding Clostridium josui scaffolding protein CipA and cellulase CelD and identification of their gene products as major components of the cellulosome.

Authors:  M Kakiuchi; A Isui; K Suzuki; T Fujino; E Fujino; T Kimura; S Karita; K Sakka; K Ohmiya
Journal:  J Bacteriol       Date:  1998-08       Impact factor: 3.490

7.  Functional insights into the role of novel type I cohesin and dockerin domains from Clostridium thermocellum.

Authors:  Benedita A Pinheiro; Harry J Gilbert; Kazutaka Sakka; Kazuo Sakka; Vânia O Fernandes; José A M Prates; Victor D Alves; David N Bolam; Luís M A Ferreira; Carlos M G A Fontes
Journal:  Biochem J       Date:  2009-12-10       Impact factor: 3.857

8.  Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose.

Authors:  Vladimir V Zverlov; Martina Klupp; Jan Krauss; Wolfgang H Schwarz
Journal:  J Bacteriol       Date:  2008-04-11       Impact factor: 3.490

9.  Induction of the celC operon of Clostridium thermocellum by laminaribiose.

Authors:  Michael Newcomb; Chun-Yu Chen; J H David Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-27       Impact factor: 11.205

10.  Dual-tagging system for the affinity purification of mammalian protein complexes.

Authors:  Richard J Giannone; W Hayes McDonald; Gregory B Hurst; Ying Huang; Jun Wu; Yie Liu; Yisong Wang
Journal:  Biotechniques       Date:  2007-09       Impact factor: 1.993

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  39 in total

1.  Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass.

Authors:  Sara E Blumer-Schuette; Richard J Giannone; Jeffrey V Zurawski; Inci Ozdemir; Qin Ma; Yanbin Yin; Ying Xu; Irina Kataeva; Farris L Poole; Michael W W Adams; Scott D Hamilton-Brehm; James G Elkins; Frank W Larimer; Miriam L Land; Loren J Hauser; Robert W Cottingham; Robert L Hettich; Robert M Kelly
Journal:  J Bacteriol       Date:  2012-05-25       Impact factor: 3.490

2.  Demonstration of the importance for cellulose hydrolysis of CelS, the most abundant cellulosomal cellulase in Clostridium thermocellum [corrected].

Authors:  David B Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

3.  Characterization and evolution of tetrameric photosystem I from the thermophilic cyanobacterium Chroococcidiopsis sp TS-821.

Authors:  Meng Li; Dmitry A Semchonok; Egbert J Boekema; Barry D Bruce
Journal:  Plant Cell       Date:  2014-03-28       Impact factor: 11.277

4.  The bifunctional alcohol and aldehyde dehydrogenase gene, adhE, is necessary for ethanol production in Clostridium thermocellum and Thermoanaerobacterium saccharolyticum.

Authors:  Jonathan Lo; Tianyong Zheng; Shuen Hon; Daniel G Olson; Lee R Lynd
Journal:  J Bacteriol       Date:  2015-02-09       Impact factor: 3.490

5.  Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.

Authors:  Lawrence Feinberg; Justine Foden; Trisha Barrett; Karen Walston Davenport; David Bruce; Chris Detter; Roxanne Tapia; Cliff Han; Alla Lapidus; Susan Lucas; Jan-Fang Cheng; Samuel Pitluck; Tanja Woyke; Natalia Ivanova; Natalia Mikhailova; Miriam Land; Loren Hauser; D Aaron Argyros; Lynne Goodwin; David Hogsett; Nicky Caiazza
Journal:  J Bacteriol       Date:  2011-04-01       Impact factor: 3.490

6.  Determination of the catalytic base in family 48 glycosyl hydrolases.

Authors:  Maxim Kostylev; David B Wilson
Journal:  Appl Environ Microbiol       Date:  2011-07-15       Impact factor: 4.792

7.  Atypical glycolysis in Clostridium thermocellum.

Authors:  Jilai Zhou; Daniel G Olson; D Aaron Argyros; Yu Deng; Walter M van Gulik; Johannes P van Dijken; Lee R Lynd
Journal:  Appl Environ Microbiol       Date:  2013-02-22       Impact factor: 4.792

8.  Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome.

Authors:  Jie Sun; Fei Wen; Tong Si; Jian-He Xu; Huimin Zhao
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

9.  Sequence, structure, and evolution of cellulases in glycoside hydrolase family 48.

Authors:  Leonid O Sukharnikov; Markus Alahuhta; Roman Brunecky; Amit Upadhyay; Michael E Himmel; Vladimir V Lunin; Igor B Zhulin
Journal:  J Biol Chem       Date:  2012-10-10       Impact factor: 5.157

10.  Role of the CipA scaffoldin protein in cellulose solubilization, as determined by targeted gene deletion and complementation in Clostridium thermocellum.

Authors:  Daniel G Olson; Richard J Giannone; Robert L Hettich; Lee R Lynd
Journal:  J Bacteriol       Date:  2012-11-30       Impact factor: 3.490

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