Literature DB >> 20833882

Persicivirga ulvanivorans sp. nov., a marine member of the family Flavobacteriaceae that degrades ulvan from green algae.

Tristan Barbeyron1, Yannick Lerat2, Jean-François Sassi2, Sophie Le Panse3, William Helbert1, Pi Nyvall Collén1.   

Abstract

A rod shaped, Gram-stain-negative, chemo-organotrophic, heterotrophic, strictly aerobic, non-gliding bacterium, designated strain PLR(T), was isolated from faeces of the mollusc Aplysia punctata (Mollusca, Gastropoda) that had been fed with green algae belonging to the genus Ulva. The novel strain was able to degrade ulvan, a polysaccharide extracted from green algae (Chlorophyta, Ulvophyceae). The taxonomic position of strain PLR(T) was investigated by using a polyphasic approach. Strain PLR(T) was dark orange, oxidase-positive, catalase-positive and grew optimally at 25 °C, at pH 7.5 and in the presence of 2.5 % (w/v) NaCl with an oxidative metabolism using oxygen as the electron acceptor. Nitrate could not be used as the electron acceptor. Strain PLR(T) had a Chargaff's coefficient (DNA G+C content) of 35.3 mol%. Phylogenetic analysis based on the sequence of the 16S rRNA gene placed the novel strain in the family Flavobacteriaceae (phylum 'Bacteroidetes'), within a clade comprising Stenothermobacter spongiae, Nonlabens tegetincola, Sandarakinotalea sediminis, Persicivirga xylanidelens and Persicivirga dokdonensis. The closest neighbours of strain PLR(T) were P. xylanidelens and P. dokdonensis, sharing 95.2 and 95.5 % 16S rRNA gene sequence similarity, respectively. Phylogenetic inference and differential phenotypic characteristics demonstrated that strain PLR(T) represents a novel species of the genus Persicivirga, for which the name Persicivirga ulvanivorans sp. nov. is proposed. The type strain is PLR(T) ( = CIP 110082(T) = DSM 22727(T)).

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20833882     DOI: 10.1099/ijs.0.024489-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  14 in total

1.  Ulvan lyases isolated from the Flavobacteria Persicivirga ulvanivorans are the first members of a new polysaccharide lyase family.

Authors:  Pi Nyvall Collén; Jean-François Sassi; Hélène Rogniaux; Hélène Marfaing; William Helbert
Journal:  J Biol Chem       Date:  2011-10-18       Impact factor: 5.157

2.  A novel unsaturated β-glucuronyl hydrolase involved in ulvan degradation unveils the versatility of stereochemistry requirements in family GH105.

Authors:  Pi Nyvall Collén; Alexandra Jeudy; Jean-François Sassi; Agnès Groisillier; Mirjam Czjzek; Pedro M Coutinho; William Helbert
Journal:  J Biol Chem       Date:  2014-01-09       Impact factor: 5.157

3.  Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene.

Authors:  Jeff S Bowman; Simon Rasmussen; Nikolaj Blom; Jody W Deming; Søren Rysgaard; Thomas Sicheritz-Ponten
Journal:  ISME J       Date:  2011-06-30       Impact factor: 10.302

4.  Ochrovirga pacifica gen. nov., sp. nov., a novel agar-lytic marine bacterium of the family Flavobacteriaceae isolated from a seaweed.

Authors:  Young-Kyung Kwon; Ji Hyung Kim; Jennifer Jooyoun Kim; Sung-Hyun Yang; Bo-Ram Ye; Soo-Jin Heo; Jung-Ho Hyun; Zhong-Ji Qian; Heung-Sik Park; Do-Hyung Kang; Chulhong Oh
Journal:  Curr Microbiol       Date:  2014-05-20       Impact factor: 2.188

5.  Complete genome sequences of two Persicivirga bacteriophages, P12024S and P12024L.

Authors:  Ilnam Kang; Hani Jang; Jang-Cheon Cho
Journal:  J Virol       Date:  2012-08       Impact factor: 5.103

6.  Structure-function analyses of a PL24 family ulvan lyase reveal key features and suggest its catalytic mechanism.

Authors:  ThirumalaiSelvi Ulaganathan; William Helbert; Moran Kopel; Ehud Banin; Miroslaw Cygler
Journal:  J Biol Chem       Date:  2018-01-30       Impact factor: 5.157

7.  New Family of Ulvan Lyases Identified in Three Isolates from the Alteromonadales Order.

Authors:  Moran Kopel; William Helbert; Yana Belnik; Vitaliy Buravenkov; Asael Herman; Ehud Banin
Journal:  J Biol Chem       Date:  2016-01-13       Impact factor: 5.157

8.  Draft Genome Sequences of Marine Flavobacterium Nonlabens Strains NR17, NR24, NR27, NR32, NR33, and Ara13.

Authors:  Masato Nakanishi; Pedro Meirelles; Ryohei Suzuki; Naoki Takatani; Sayaka Mino; Wataru Suda; Kenshiro Oshima; Masahira Hattori; Moriya Ohkuma; Masashi Hosokawa; Kazuo Miyashita; Fabiano L Thompson; Ako Niwa; Toko Sawabe; Tomoo Sawabe
Journal:  Genome Announc       Date:  2014-11-13

9.  Draft Genome Sequence of Pseudoalteromonas sp. Strain PLSV, an Ulvan-Degrading Bacterium.

Authors:  Moran Kopel; William Helbert; Bernard Henrissat; Tirza Doniger; Ehud Banin
Journal:  Genome Announc       Date:  2014-12-11

10.  Bacterial communities of surface mixed layer in the Pacific sector of the western Arctic Ocean during sea-ice melting.

Authors:  Dukki Han; Ilnam Kang; Ho Kyung Ha; Hyun Cheol Kim; Ok-Sun Kim; Bang Yong Lee; Jang-Cheon Cho; Hor-Gil Hur; Yoo Kyung Lee
Journal:  PLoS One       Date:  2014-01-31       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.